Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G10_e79_14.seq
         (1502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.0  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    30   4.2  
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              30   5.5  
SB_41380| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-16)                 30   5.5  

>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 377 NKQHLNDDNLEKIRNSATENTDDFESIATNTEQLPTGRNQVKSNSDTHDGDI 532
           N +H+NDDN  K  N+  +  DD  +   N +      N   +++DT+D +I
Sbjct: 47  NNKHINDDNDNKTNNNDKDTNDD-NTNEDNDKNNNDDNNNKTNDNDTNDENI 97


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
 Frame = +2

Query: 197  THRSRKKETERVRSQSVPGHSPEHNEHHLGYNNRVFSQPAT-LAIYDPPSEYTYEIF--- 364
            T  S +KE E  +++S   ++    +H+   N++  ++P T       P   T E     
Sbjct: 3056 TSLSVRKEDEDSKARSPTNNNNNKEQHNSKPNHKKSTRPTTDNKQQSQPQTTTAEPITKT 3115

Query: 365  FSFINKQHLNDDNLEKIRNSATENTDDFESIATNTEQLPTGRNQVKSNSDTHDGDIVKKE 544
             S   K   N+++     N++   T++     TN    PT  N+  + ++T+  D    E
Sbjct: 3116 TSTTAKPTTNNNSKPTTNNNSKPTTNNNSKPTTNNNSKPTTNNKKVNLNNTNKKDSELTE 3175

Query: 545  T-PVSRELATQKR 580
            T  + +E+A ++R
Sbjct: 3176 TQEIVQEVAPKQR 3188


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 3/122 (2%)
 Frame = -2

Query: 664  HXNCSVILG-YSTRGLCNYSWYMNLGFNVTFLCCKFPGHRSFFLYYVTVVSIRI*FNLVP 488
            H  C  I+  Y++   C Y + +++   +  +      H      YV  +S+RI   +V 
Sbjct: 1557 HCQCVYIVSAYTSNCQCVYIYTLSVRIRLYIVSAYTSIHCQ--CVYVYTLSVRIRLYIVS 1614

Query: 487  TSRKLFSICCY*FKIVSIFCCAIANFLQVVIIKMLFIYETEKYFISIFTRRV--VYCQCC 314
                +   C Y + +    C  I +   +  + +  +      F S  + R+  ++CQC 
Sbjct: 1615 AYTSIHCQCVYGYTLSVRICLYIVSAYNIYTLSVRTLLYIVSAFTSTLSVRITSIHCQCV 1674

Query: 313  WL 308
            ++
Sbjct: 1675 YI 1676


>SB_41380| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-16)
          Length = 394

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 637 YSTRGLCNYSWYMNLGFN--VTFLCCKFPGHRSFFLYYVTV 521
           Y+TR  CN  W   LGF    TF CC    H    +YY TV
Sbjct: 37  YATRRHCNLFWRGLLGFGDADTFPCCLRDTHLD--IYYTTV 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,617,756
Number of Sequences: 59808
Number of extensions: 655629
Number of successful extensions: 1668
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4871177455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)