BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030623sawa_G10_e79_14.seq (1502 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.0 SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 30 4.2 SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 30 5.5 SB_41380| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-16) 30 5.5 >SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 218 Score = 32.3 bits (70), Expect = 1.0 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +2 Query: 377 NKQHLNDDNLEKIRNSATENTDDFESIATNTEQLPTGRNQVKSNSDTHDGDI 532 N +H+NDDN K N+ + DD + N + N +++DT+D +I Sbjct: 47 NNKHINDDNDNKTNNNDKDTNDD-NTNEDNDKNNNDDNNNKTNDNDTNDENI 97 >SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) Length = 3368 Score = 30.3 bits (65), Expect = 4.2 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 5/133 (3%) Frame = +2 Query: 197 THRSRKKETERVRSQSVPGHSPEHNEHHLGYNNRVFSQPAT-LAIYDPPSEYTYEIF--- 364 T S +KE E +++S ++ +H+ N++ ++P T P T E Sbjct: 3056 TSLSVRKEDEDSKARSPTNNNNNKEQHNSKPNHKKSTRPTTDNKQQSQPQTTTAEPITKT 3115 Query: 365 FSFINKQHLNDDNLEKIRNSATENTDDFESIATNTEQLPTGRNQVKSNSDTHDGDIVKKE 544 S K N+++ N++ T++ TN PT N+ + ++T+ D E Sbjct: 3116 TSTTAKPTTNNNSKPTTNNNSKPTTNNNSKPTTNNNSKPTTNNKKVNLNNTNKKDSELTE 3175 Query: 545 T-PVSRELATQKR 580 T + +E+A ++R Sbjct: 3176 TQEIVQEVAPKQR 3188 >SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) Length = 1977 Score = 29.9 bits (64), Expect = 5.5 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 3/122 (2%) Frame = -2 Query: 664 HXNCSVILG-YSTRGLCNYSWYMNLGFNVTFLCCKFPGHRSFFLYYVTVVSIRI*FNLVP 488 H C I+ Y++ C Y + +++ + + H YV +S+RI +V Sbjct: 1557 HCQCVYIVSAYTSNCQCVYIYTLSVRIRLYIVSAYTSIHCQ--CVYVYTLSVRIRLYIVS 1614 Query: 487 TSRKLFSICCY*FKIVSIFCCAIANFLQVVIIKMLFIYETEKYFISIFTRRV--VYCQCC 314 + C Y + + C I + + + + + F S + R+ ++CQC Sbjct: 1615 AYTSIHCQCVYGYTLSVRICLYIVSAYNIYTLSVRTLLYIVSAFTSTLSVRITSIHCQCV 1674 Query: 313 WL 308 ++ Sbjct: 1675 YI 1676 >SB_41380| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-16) Length = 394 Score = 29.9 bits (64), Expect = 5.5 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = -2 Query: 637 YSTRGLCNYSWYMNLGFN--VTFLCCKFPGHRSFFLYYVTV 521 Y+TR CN W LGF TF CC H +YY TV Sbjct: 37 YATRRHCNLFWRGLLGFGDADTFPCCLRDTHLD--IYYTTV 75 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 35,617,756 Number of Sequences: 59808 Number of extensions: 655629 Number of successful extensions: 1668 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1488 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1661 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4871177455 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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