Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G10_e79_14.seq
         (1502 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37976-1|CAA86030.1| 1821|Homo sapiens LTBP-2 precursor protein.       32   6.3  
S82451-1|AAB37459.1| 1821|Homo sapiens latent transforming growt...    32   6.3  
BC078659-1|AAH78659.1| 1821|Homo sapiens latent transforming gro...    32   6.3  
AB209865-1|BAD93102.1| 1700|Homo sapiens latent transforming gro...    32   6.3  

>Z37976-1|CAA86030.1| 1821|Homo sapiens LTBP-2 precursor protein.
          Length = 1821

 Score = 31.9 bits (69), Expect = 6.3
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 520  RR*HSKERNSCVQ-GTCNTKTSH*SPGSYTSCSCKVHGCYTQG*QSNSCAQASQKI-PTV 693
            R+ H ++ N C   GTC       SPGSYT  +C+  G   +G QS SC   ++ + P V
Sbjct: 964  RKGHCQDINECRHPGTCPDGRCVNSPGSYTCLACE-EG--YRG-QSGSCVDVNECLTPGV 1019

Query: 694  NRTTVCTSVKNPF 732
                 CT+++  F
Sbjct: 1020 CAHGKCTNLEGSF 1032


>S82451-1|AAB37459.1| 1821|Homo sapiens latent transforming growth
            factor-beta-binding protein-2 protein.
          Length = 1821

 Score = 31.9 bits (69), Expect = 6.3
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 520  RR*HSKERNSCVQ-GTCNTKTSH*SPGSYTSCSCKVHGCYTQG*QSNSCAQASQKI-PTV 693
            R+ H ++ N C   GTC       SPGSYT  +C+  G   +G QS SC   ++ + P V
Sbjct: 964  RKGHCQDINECRHPGTCPDGRCVNSPGSYTCLACE-EG--YRG-QSGSCVDVNECLTPGV 1019

Query: 694  NRTTVCTSVKNPF 732
                 CT+++  F
Sbjct: 1020 CAHGKCTNLEGSF 1032


>BC078659-1|AAH78659.1| 1821|Homo sapiens latent transforming growth
            factor beta binding protein 2 protein.
          Length = 1821

 Score = 31.9 bits (69), Expect = 6.3
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 520  RR*HSKERNSCVQ-GTCNTKTSH*SPGSYTSCSCKVHGCYTQG*QSNSCAQASQKI-PTV 693
            R+ H ++ N C   GTC       SPGSYT  +C+  G   +G QS SC   ++ + P V
Sbjct: 964  RKGHCQDINECRHPGTCPDGRCVNSPGSYTCLACE-EG--YRG-QSGSCVDVNECLTPGV 1019

Query: 694  NRTTVCTSVKNPF 732
                 CT+++  F
Sbjct: 1020 CAHGKCTNLEGSF 1032


>AB209865-1|BAD93102.1| 1700|Homo sapiens latent transforming growth
            factor beta binding protein 2 variant protein.
          Length = 1700

 Score = 31.9 bits (69), Expect = 6.3
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 520  RR*HSKERNSCVQ-GTCNTKTSH*SPGSYTSCSCKVHGCYTQG*QSNSCAQASQKI-PTV 693
            R+ H ++ N C   GTC       SPGSYT  +C+  G   +G QS SC   ++ + P V
Sbjct: 843  RKGHCQDINECRHPGTCPDGRCVNSPGSYTCLACE-EG--YRG-QSGSCVDVNECLTPGV 898

Query: 694  NRTTVCTSVKNPF 732
                 CT+++  F
Sbjct: 899  CAHGKCTNLEGSF 911


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,702,318
Number of Sequences: 237096
Number of extensions: 3197499
Number of successful extensions: 7128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7127
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22307317538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)