Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G10_e79_14.seq
         (1502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical ...    32   0.92 
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   6.5  
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    29   6.5  
AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical ...    29   6.5  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    29   6.5  

>AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical
           protein T24C4.9 protein.
          Length = 105

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -2

Query: 475 LFSICCY*FKIVSIFCCAIANFLQVVIIKMLFIYETEKYFISIFTRRVVYCQCCWLGKNP 296
           L   CC  F IV IF C++++ +   +I +   Y      +  FT ++    C   G N 
Sbjct: 4   LLDWCCMLFHIVHIFVCSVSSMVLRSVIVLSAGYLASLALMGYFTIKMT-LMCVVFGTNT 62

Query: 295 -IIVTQVVFVV 266
            +I+T V+ ++
Sbjct: 63  LVIITDVISMI 73


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +2

Query: 368 SFINKQHLNDDNLEKIRNSATENTDDFESIATNTEQLPTGRNQVKSNSD-----THDGDI 532
           S  +++H+ +D L KIR +   N      +A++ EQ+   +NQ +S  D      H  + 
Sbjct: 692 SAADQKHILEDYLRKIRQAEETNEKLRSDLASSEEQILDLKNQQESLIDDLKEKLHSAES 751

Query: 533 VKKETPVSREL 565
             +E  VS E+
Sbjct: 752 TNQELQVSLEM 762


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +2

Query: 365 FSFINKQHLNDDNLEKIRNSATENTDDFESIATNTEQLPTGRNQVKSNSDTHDGD 529
           F ++NK+++   N +++ N+  +++DD E           GR +  S+ D+ D D
Sbjct: 417 FDYLNKKNIKIRNSQRVENTVADSSDD-EIDPYKAAVTAEGRQRDDSDDDSTDED 470


>AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical
           protein Y79H2A.3b protein.
          Length = 1271

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -2

Query: 331 VYCQCCW--LGKNPIIVTQ 281
           V CQCCW    KNPI V Q
Sbjct: 510 VTCQCCWQVFSKNPIFVNQ 528


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
           protein Y79H2A.3a protein.
          Length = 2129

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -2

Query: 331 VYCQCCW--LGKNPIIVTQ 281
           V CQCCW    KNPI V Q
Sbjct: 510 VTCQCCWQVFSKNPIFVNQ 528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,330,846
Number of Sequences: 27780
Number of extensions: 501870
Number of successful extensions: 1329
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4329178048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)