Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G10_e79_14.seq
         (1502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39690.1 68417.m05616 expressed protein                             33   0.37 
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ...    32   0.85 
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ...    30   4.5  

>At4g39690.1 68417.m05616 expressed protein
          Length = 650

 Score = 33.5 bits (73), Expect = 0.37
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +2

Query: 389 LNDDNLEKIRNSATENTDDFESIATNTEQLPTGRNQVKSNSDTHDGDIVKKETPVSRELA 568
           L + NLE     +T ++   E I   TE  P     +K +  T DG +V           
Sbjct: 278 LKEYNLEGSDTESTGSSSIGEQITKETEAFPNSTEGLKDSYMTEDGKLVLDFLAAIHAAE 337

Query: 569 TQKRHIEAQV 598
            Q+ H++AQV
Sbjct: 338 KQQAHLDAQV 347


>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
           SP|P46087 Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) {Homo
           sapiens}, SP|P40991 Nucleolar protein NOP2
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 682

 Score = 32.3 bits (70), Expect = 0.85
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +2

Query: 377 NKQHLNDDNLEKIRNSATENTDDFESIATNTEQLPTGRNQVKSNSDTHDGDIVKKETPVS 556
           + Q  +DD  E+  +  T   D  E      E+   G     S++D+ D DIV K   + 
Sbjct: 106 SNQLFSDD--EEENDEETLGDDFLEGSGDEDEE---GSLDADSDADSDDDDIVAKSDAID 160

Query: 557 RELATQKRHIEAQV 598
           R+LA QK+   A++
Sbjct: 161 RDLAMQKKDAAAEL 174


>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 488

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +1

Query: 604 TSCSCKVHGCYTQG*QSNSCAQASQKIPTVNRTTVCTSVKNPFXI*IMTFQLEFPTFSDR 783
           T C CKV+  YT G     C     +   +N    C+SV  PF   +    L F   S R
Sbjct: 363 TYCQCKVYDVYTDG-FIYKCHHEDCESKYINYDARCSSVLEPFHHDLHQHPLYFTLQSSR 421

Query: 784 K 786
           +
Sbjct: 422 R 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,727,054
Number of Sequences: 28952
Number of extensions: 447711
Number of successful extensions: 1047
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4009654272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)