Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G08_e63_14.seq
         (1537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    81   5e-16
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    54   4e-08
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    54   4e-08
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    54   4e-08
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    27   5.2  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 80.6 bits (190), Expect = 5e-16
 Identities = 42/104 (40%), Positives = 58/104 (55%)
 Frame = +2

Query: 218 FXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HDLV 397
           F A + ILE  SI+  GYS VMHIH A EE +   L+  +D K   KSK  P      + 
Sbjct: 560 FIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMK 618

Query: 398 AIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVIE 529
            I  +E    +C+E F     MG FT RD+  T+A+GKV+K+++
Sbjct: 619 IIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 33/104 (31%), Positives = 49/104 (47%)
 Frame = +2

Query: 218 FXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HDLV 397
           F A V+IL     I AGYS V+  H A        LI  +D + G K +  P+       
Sbjct: 338 FTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDA 397

Query: 398 AIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVIE 529
            I ++  +  +C+E F     +G F  RD   T+A+G V+K +E
Sbjct: 398 CIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVG-VIKAVE 440


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 33/104 (31%), Positives = 49/104 (47%)
 Frame = +2

Query: 218 FXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HDLV 397
           F A V+IL     I AGYS V+  H A        LI  +D + G K +  P+       
Sbjct: 338 FTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDA 397

Query: 398 AIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVIE 529
            I ++  +  +C+E F     +G F  RD   T+A+G V+K +E
Sbjct: 398 CIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVG-VIKAVE 440


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 33/104 (31%), Positives = 49/104 (47%)
 Frame = +2

Query: 218 FXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HDLV 397
           F A V+IL     I AGYS V+  H A        LI  +D + G K +  P+       
Sbjct: 338 FTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDA 397

Query: 398 AIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVIE 529
            I ++  +  +C+E F     +G F  RD   T+A+G V+K +E
Sbjct: 398 CIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVG-VIKAVE 440


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 295 AMYVHDVGVSRAYYRXXLEDHYXRXE 218
           A YVHD+ V++ YY   L D   + E
Sbjct: 85  AAYVHDLHVAQRYYADRLSDRVKKSE 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,214
Number of Sequences: 5004
Number of extensions: 35770
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 862245690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)