Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_G08_e63_14.seq
(1537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 54 2e-07
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 54 2e-07
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 48 2e-05
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 40 0.004
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 35 0.20
06_03_1132 - 27883151-27883777 31 3.2
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 54.4 bits (125), Expect = 2e-07
Identities = 41/162 (25%), Positives = 64/162 (39%)
Frame = +2
Query: 35 LLXTSGXPPGLQXIRHEXKXTSIGPAXKM**VXLKGXXVVKTYLLVLFYXTPSNLSPLVR 214
L+ G ++ I + I A V L+G K L + P P+
Sbjct: 514 LISPCGEVAAVKSIERDSNSCDIARAGDNVAVSLQGIDGSKLILGGILC-NPGFPVPVSN 572
Query: 215 XFXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HDL 394
V++L+ I GY HIH E V ++ L+D K G SKT PR
Sbjct: 573 FLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLD-KAGKPSKTAPRFLKSKQ 631
Query: 395 VAIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLK 520
A++++ +C++ F +G R TIA+G V +
Sbjct: 632 NAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVVTR 673
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 54.4 bits (125), Expect = 2e-07
Identities = 41/162 (25%), Positives = 64/162 (39%)
Frame = +2
Query: 35 LLXTSGXPPGLQXIRHEXKXTSIGPAXKM**VXLKGXXVVKTYLLVLFYXTPSNLSPLVR 214
L+ G ++ I + I A V L+G K L + P P+
Sbjct: 514 LISPCGEVAAVKSIERDSNSCDIARAGDNVAVSLQGIDGSKLILGGILC-NPGFPVPVSN 572
Query: 215 XFXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HDL 394
V++L+ I GY HIH E V ++ L+D K G SKT PR
Sbjct: 573 FLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLD-KAGKPSKTAPRFLKSKQ 631
Query: 395 VAIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLK 520
A++++ +C++ F +G R TIA+G V +
Sbjct: 632 NAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVVTR 673
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 48.0 bits (109), Expect = 2e-05
Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Frame = +2
Query: 209 VRXFXAXVVILEXX--SIICAGYSDVMHIHCAAEEXTVKALICLVDXK-------XGDKS 361
V F A + ILE +I AGY V+HIH EE + LI +D K K
Sbjct: 316 VTEFNAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKP 375
Query: 362 KTXPRXX*HDLVAIMRIECAGVICLEPFXXXXXMGXFTXRDE 487
K P + V + RI+ +IC+E F +G FT R E
Sbjct: 376 KRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLRTE 417
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 40.3 bits (90), Expect = 0.004
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 323 LICLVDXKXGDKSKTXPRXX*HDLVAIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIA 502
++ L++ K G SK PR A++ ++ +C+E F +G R + TIA
Sbjct: 584 ILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIA 643
Query: 503 IGKVLKVIE 529
+G V +V E
Sbjct: 644 VGIVSRVRE 652
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 34.7 bits (76), Expect = 0.20
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +2
Query: 209 VRXFXAXVVILEXX--SIICAGYSDVMHIHCAAEEXTVKALICLVD---XKXGD----KS 361
+ F A + ILE +I AGY V+HIH EE + LI +D K GD KS
Sbjct: 271 ISEFRAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELIEEIDLKRRKEGDIKKKKS 330
Query: 362 KTXPRXX*HDLVAIMRIE 415
K P + V + R++
Sbjct: 331 KRKPLFVKNGAVVVCRVQ 348
>06_03_1132 - 27883151-27883777
Length = 208
Score = 30.7 bits (66), Expect = 3.2
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +1
Query: 199 ITTGTXVXCASSDPRAXIYNMRGILRRHAHTLRCRRXHXXGAYLFGGXKAR**VKDATAX 378
++ G + CA S P + G RRH H+L R G +AR V AT+
Sbjct: 108 VSEGALLGCAGSRPPPPRASRSGSRRRHRHSLLPRASRARGDVAAAASRARGAVVAATSR 167
Query: 379 XLT-*PSCHHE 408
+ PS H E
Sbjct: 168 LVRWEPSGHRE 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,402,270
Number of Sequences: 37544
Number of extensions: 230214
Number of successful extensions: 251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4942498008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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