Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G08_e63_14.seq
         (1537 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           61   3e-09
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 50   5e-06

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 60.9 bits (141), Expect = 3e-09
 Identities = 29/57 (50%), Positives = 34/57 (59%)
 Frame = +2

Query: 317 KALICLVDXKXGDKSKTXPRXX*HDLVAIMRIECAGVICLEPFXXXXXMGXFTXRDE 487
           K LI L+D K G K +T PR    D +AI R+E  GVIC+E F     MG FT RDE
Sbjct: 490 KRLIALIDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRDE 546


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 50.0 bits (114), Expect = 5e-06
 Identities = 30/110 (27%), Positives = 52/110 (47%)
 Frame = +2

Query: 212 RXFXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HD 391
           + F A V+++     I AGYS V+  H A        L+  +D + G K +  P+     
Sbjct: 197 KSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTG 256

Query: 392 LVAIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVIEXNRA 541
             A++ +  +  +C+E F     +G F  RD   T+A+G V+K ++   A
Sbjct: 257 DAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVG-VIKSVDKTEA 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,447,331
Number of Sequences: 59808
Number of extensions: 269383
Number of successful extensions: 297
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5000293002
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)