Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G08_e63_14.seq
         (1537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    99   4e-21
U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    48   1e-05
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    48   1e-05
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    48   1e-05
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    41   0.002
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    41   0.002

>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score =   99 bits (238), Expect = 4e-21
 Identities = 54/115 (46%), Positives = 69/115 (60%)
 Frame = +2

Query: 185 TPSNLSPLVRXFXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSK 364
           +P +L+   R F A V++LE  SII +GYS V+HI  A EE TVK +I  +D K G+K +
Sbjct: 420 SPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKR 479

Query: 365 TXPRXX*HDLVAIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVIE 529
              +    D   IMR+E      LEPF     +G FT RDE  TIAIGKVLKV+E
Sbjct: 480 A--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVVE 532


>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 31/106 (29%), Positives = 47/106 (44%)
 Frame = +2

Query: 212 RXFXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HD 391
           R F A V+I+     I  GY+ V+  H A        L   VD + G K +  P+     
Sbjct: 304 RTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSG 363

Query: 392 LVAIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVIE 529
              I+ +     +C+E F     +G F  RD   T+A+G V+K +E
Sbjct: 364 DAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVG-VIKSVE 408


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 31/106 (29%), Positives = 47/106 (44%)
 Frame = +2

Query: 212 RXFXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HD 391
           R F A V+I+     I  GY+ V+  H A        L   VD + G K +  P+     
Sbjct: 338 RTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSG 397

Query: 392 LVAIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVIE 529
              I+ +     +C+E F     +G F  RD   T+A+G V+K +E
Sbjct: 398 DAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVG-VIKSVE 442


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 31/106 (29%), Positives = 47/106 (44%)
 Frame = +2

Query: 212 RXFXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HD 391
           R F A V+I+     I  GY+ V+  H A        L   VD + G K +  P+     
Sbjct: 338 RTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSG 397

Query: 392 LVAIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVIE 529
              I+ +     +C+E F     +G F  RD   T+A+G V+K +E
Sbjct: 398 DAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVG-VIKSVE 442


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 32/113 (28%), Positives = 44/113 (38%)
 Frame = +2

Query: 188 PSNLSPLVRXFXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKT 367
           P  L P  + F   +V  E    I  G    ++ H      T   L+  ++   G+  K 
Sbjct: 478 PDTLIPS-KKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKK 536

Query: 368 XPRXX*HDLVAIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVI 526
            PR       A++ IE    I +E F     +G  T R    TIA G V KVI
Sbjct: 537 GPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKVI 589


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 32/113 (28%), Positives = 44/113 (38%)
 Frame = +2

Query: 188 PSNLSPLVRXFXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKT 367
           P  L P  + F   +V  E    I  G    ++ H      T   L+  ++   G+  K 
Sbjct: 496 PDTLIPS-KKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKK 554

Query: 368 XPRXX*HDLVAIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVI 526
            PR       A++ IE    I +E F     +G  T R    TIA G V KVI
Sbjct: 555 GPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKVI 607


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,939,701
Number of Sequences: 27780
Number of extensions: 207786
Number of successful extensions: 261
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4421410548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)