Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G08_e63_14.seq
         (1537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    44   5e-06
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    41   3e-05

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 43.6 bits (98), Expect = 5e-06
 Identities = 26/102 (25%), Positives = 44/102 (43%)
 Frame = +2

Query: 218 FXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HDLV 397
           F A V++L     I  GY+ V+  H A        +    D + G  ++  P+       
Sbjct: 340 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDA 399

Query: 398 AIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKV 523
           AI+ ++    +C+E F     +G F  RD   T+A+G +  V
Sbjct: 400 AIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSV 441


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 40.7 bits (91), Expect = 3e-05
 Identities = 27/103 (26%), Positives = 45/103 (43%)
 Frame = +2

Query: 218 FXAXVVILEXXSIICAGYSDVMHIHCAAEEXTVKALICLVDXKXGDKSKTXPRXX*HDLV 397
           F A V++L     I  GY+ V+  H A        +    D + G  ++  P+       
Sbjct: 340 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDA 399

Query: 398 AIMRIECAGVICLEPFXXXXXMGXFTXRDENXTIAIGKVLKVI 526
           AI+ +  +  +C E F     +G F  RD   T+A+G V+K +
Sbjct: 400 AIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVG-VIKAV 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,169
Number of Sequences: 438
Number of extensions: 2713
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53831250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)