Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_G07_e55_13.seq
(1514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 32 1.4
01_05_0096 + 18073573-18073839,18073890-18074294 31 1.8
12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797 30 4.2
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 30 4.2
07_01_0535 + 3952066-3952986 30 4.2
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 30 4.2
07_03_0172 + 14697741-14697869,14697878-14697998,14698134-146982... 30 5.5
02_05_1146 - 34440647-34441674,34442138-34443896 29 7.3
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 9.6
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897... 29 9.6
>06_03_0912 +
25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 31.9 bits (69), Expect = 1.4
Identities = 16/71 (22%), Positives = 38/71 (53%)
Frame = +1
Query: 286 KQRIENYENFLXEHKIQKXKATWCDFPESEKSQNNLTKSVDMTLQKKKVKHDKQELEIDK 465
+ R+ YE+ + + W FPE KS+ NL + +M +++++ K+E+++
Sbjct: 80 EDRLAVYESSSNDGHDGSLRHEWSSFPEKLKSRYNLPR--EMKKMRRRLEGIKKEMDLTS 137
Query: 466 EQIEITTEKPE 498
+++ TE+ +
Sbjct: 138 FKVDGATEEQD 148
>01_05_0096 + 18073573-18073839,18073890-18074294
Length = 223
Score = 31.5 bits (68), Expect = 1.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 343 KATWCDFPESEKSQNNLTKSVDMTLQKKKVKHDKQELEIDKEQIE 477
+ TW + K+ N L + T +KKV DK E E+ KE+ E
Sbjct: 114 QVTWTSLEYTSKANNKLAATATTTT-RKKVDWDKLEAEVKKEEEE 157
>12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797
Length = 341
Score = 30.3 bits (65), Expect = 4.2
Identities = 23/88 (26%), Positives = 42/88 (47%)
Frame = +1
Query: 214 EVMKEQLLKAKQFTDDAKKREEAEKQRIENYENFLXEHKIQKXKATWCDFPESEKSQNNL 393
+++K ++ K + K EK + E+Y+ L + K + + E EK N
Sbjct: 156 KLLKTIFVEEKDRNEHLKTMLGEEKDKNEHYKTMLAKEKDKAEHHK--NMLEEEKDNNKR 213
Query: 394 TKSVDMTLQKKKVKHDKQELEIDKEQIE 477
K++ + +K K KH K LE +K++ E
Sbjct: 214 LKTM-LVEEKDKNKHHKIILEEEKDKNE 240
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +1
Query: 178 SNEKAPEDG-TPWEVMKEQLLKAKQFTDDAKKREEAEKQRIENYENFLXEHKIQKXKATW 354
+ EK E+G P ++ +Q + + D K +EE E ++ E E + +K
Sbjct: 164 NGEKCEENGGKPAQISDDQAVNGCNGSADKKDKEE-ETEKDNEKEKEDKEEETEKDNEKE 222
Query: 355 CDFPESEKSQNNLTKSVDMTLQKKKVKHDKQELEIDKEQIEITTEK 492
+ E E ++N + + +K K ++E E ++E++E +K
Sbjct: 223 KEDKEEETKKDNEKEKEQLMGTDEKEKEKEKEDENEEEKLEEEEKK 268
>07_01_0535 + 3952066-3952986
Length = 306
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 172 KASNEKAPEDGTPWEVMKEQLLKAKQFTDDAKKREE--AEKQRIENYENFLXEHKIQ 336
K N+ E+ TP + E+ AKQ ++ ++ EE EK + E +++ +H+ Q
Sbjct: 135 KVPNQCKDEENTPGQYQDEEQKIAKQCKEEEEEEEENALEKYQDEEHKSLKAQHQCQ 191
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 30.3 bits (65), Expect = 4.2
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Frame = +1
Query: 223 KEQLLKAKQFTDDAKKREEAEKQRI----ENYENFLXEHKIQKXKA------TWCDFPES 372
+E+LL ++ + ++E E QRI E + F E K + +A T D E
Sbjct: 424 EEKLLLHREAIHNELQKEREEIQRIKSDLEKEKAFFEEEKREAIQAQQDLAITQADRDEL 483
Query: 373 EKSQNNLTKSVD-MTLQKKKVKHDKQELEIDKEQIEITTE 489
Q L + +D + QK+++ D L+ +KE+ EI E
Sbjct: 484 LTLQMKLKEEIDSLRAQKRELMADADRLQAEKERFEIEWE 523
>07_03_0172 +
14697741-14697869,14697878-14697998,14698134-14698226,
14700888-14700946,14701003-14701599,14702813-14703020,
14703102-14703178,14703263-14703302,14703413-14703473,
14704120-14704189,14705014-14705235
Length = 558
Score = 29.9 bits (64), Expect = 5.5
Identities = 31/106 (29%), Positives = 44/106 (41%)
Frame = +1
Query: 148 RFARAKGSKASNEKAPEDGTPWEVMKEQLLKAKQFTDDAKKREEAEKQRIENYENFLXEH 327
RF A +EKA TP V+K L+KA T K +K R Y L E
Sbjct: 390 RFVDAVNLLGGSEKA----TPKGVLK--LMKADNLTIYHVK-SHLQKYRTARYRPELSEG 442
Query: 328 KIQKXKATWCDFPESEKSQNNLTKSVDMTLQKKKVKHDKQELEIDK 465
+K A+ D P + N + + LQ + K ++LEI +
Sbjct: 443 SSEKKAASKEDIPSIDLKGGNFDLTEALRLQLELQKRLHEQLEIQR 488
>02_05_1146 - 34440647-34441674,34442138-34443896
Length = 928
Score = 29.5 bits (63), Expect = 7.3
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Frame = +1
Query: 241 AKQFTDDAKKRE-EAEKQRIENYE----NFLXEHK-IQKXKATWCDFPE-SEKSQNNLTK 399
A +FT+DAK+ + + R ++ FL + ++ A + +FP+ S S N++
Sbjct: 777 AARFTEDAKQNPVQIPRSRTNGWQASWKKFLIDMMYLRGYVALYPNFPDQSSFSTNHMEP 836
Query: 400 SVDMTLQKKKVKHDKQELEI 459
++ + VKHDK++ E+
Sbjct: 837 GAHISAKGNVVKHDKRDFEV 856
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 29.1 bits (62), Expect = 9.6
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Frame = +1
Query: 154 ARAKGSKASNEKAPEDGTPWEVMKEQLLKAKQFTDDAKKRE--EAEKQRIENYENFLXEH 327
++ G E DGT +E + + + K+ + E K+++ENY+
Sbjct: 471 SKLHGKIQETELKEHDGTTYEFLVKWVGKSNIHNSWISESELKALAKRKLENYKAKYGTD 530
Query: 328 KIQKXKATWCDFPESEKSQNNLTKSVDMT---LQKKKVKHDKQELEIDK 465
+I++ WC P E + L + + L + K + Q L+ DK
Sbjct: 531 EIEEALIKWCALPYDECTWERLDEPTMVKYAHLVTQFKKFESQALDKDK 579
>03_05_0172 - 21488504-21488752,21488862-21489611,21489691-21489789,
21489862-21490776,21490847-21490976,21491438-21491583,
21491801-21491896,21492521-21492613,21492702-21492755,
21492897-21492956,21493046-21493171,21493283-21493366,
21493444-21493587,21493667-21493963
Length = 1080
Score = 29.1 bits (62), Expect = 9.6
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 223 KEQLLKAKQFTDDAKKREEAEKQRIENYENFLX-----EHKIQKXKATWCDFPESEKSQN 387
+E+LL Q D K++ E + E+ E+++ + + W ESE
Sbjct: 789 REELLSEIQRLKDQLKQQAGESTNVSLLEHLRNGSTDQEYELDREREKWM---ESESKWI 845
Query: 388 NLTKSVDMTLQKKKVKHDKQELEIDKEQ 471
LT+ + + L+ ++ +K E+E+ E+
Sbjct: 846 CLTEELRVDLESNRMLAEKTEMELSNEK 873
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,500,271
Number of Sequences: 37544
Number of extensions: 327824
Number of successful extensions: 723
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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