Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G07_e55_13.seq
         (1514 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    29   0.46 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   1.1  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    25   7.6  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 23/77 (29%), Positives = 44/77 (57%)
 Frame = +1

Query: 262  AKKREEAEKQRIENYENFLXEHKIQKXKATWCDFPESEKSQNNLTKSVDMTLQKKKVKHD 441
            AKKR E E+Q I+   N L   + ++ K T  +    E++  +   S++ T ++ + +  
Sbjct: 816  AKKRAEFEQQ-IDRINNNL---EFERSKDTSKNVQRWERAVQDDEDSLE-TFKQAEARQ- 869

Query: 442  KQELEIDKEQIEITTEK 492
            +QE+E DKE+IE+  ++
Sbjct: 870  RQEIEKDKEKIELMKQE 886


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = +1

Query: 250 FTDDAKKREEAEKQRIENYENFLXEHKIQKXKATWCDFPESEKSQNNLTKSVDMTLQKKK 429
           + + ++ R E +K+R E Y   + EH  +K  A   DF    K       S+   +QK +
Sbjct: 669 YFNTSRSRLEMQKKRSE-YSQLIQEH--EKELA---DFRAELKQTEANINSIVSEMQKTE 722

Query: 430 VKHDKQELEIDKEQIEITTEKPE 498
            K  K +   +K Q +I   K E
Sbjct: 723 TKQGKSKDAFEKIQADIRLMKDE 745


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 184 EKAPEDGTPWE--VMKEQLLKAKQFTDDAKKREEAEKQRIENYE 309
           E  PEDG+P E  + +EQ  +A+   ++A + E  E +  +  E
Sbjct: 67  EPVPEDGSPDEEHLEEEQEEEAEADEEEADESESEESEESDELE 110


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 904,285
Number of Sequences: 2352
Number of extensions: 13159
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 177594615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)