Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_G06_e47_14.seq
(1568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 50 7e-07
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 44 4e-05
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 44 6e-05
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 44 8e-05
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 38 0.003
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 38 0.003
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 37 0.009
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 36 0.015
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.035
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 35 0.035
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 34 0.047
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 34 0.062
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 33 0.081
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 33 0.11
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 33 0.11
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 33 0.11
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 32 0.25
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 32 0.25
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 31 0.43
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 31 0.43
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 31 0.57
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 1.0
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 29 1.3
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 1.8
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 28 4.0
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 27 5.3
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 5.3
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 27 5.3
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 5.3
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 50.4 bits (115), Expect = 7e-07
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +3
Query: 189 QGDVDEELICPICSGVLEDPLQAPACEHAFCRACITEWISRQPTCPVDR 335
Q +V EL C IC G+L DP+ +P C H FC C+ + +++ P CP R
Sbjct: 160 QENVSRELECQICFGMLYDPVVSP-CGHTFCGPCLMQALTQSPQCPTCR 207
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 162 DMGFEIKRFQGDVD--EELICPICSGVLEDPLQAPACEHAFCRACITEWIS 308
D+ KR D++ E ++C IC V +D +++ C H FCR C+TE+I+
Sbjct: 691 DLVLASKRKTVDIENQENIVCKICDEVAQDAIES-RCHHTFCRLCVTEYIN 740
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 44.0 bits (99), Expect = 6e-05
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 177 IKRFQGDVDEELICPICSGVLEDPLQAPACEHAFCRACITEWISRQPTCPVDRQ 338
++ FQ + + L CPIC+ L+ P C H +C C+ W+ +CP RQ
Sbjct: 73 LETFQ-KIKKTLECPICTEALQRPFTTH-CGHTYCYECLLNWLKESKSCPTCRQ 124
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 43.6 bits (98), Expect = 8e-05
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 198 VDEELICPICSGVLEDPLQAPACEHAFCRACITEWISRQPTCPVDRQAVTASQLR 362
+D L C IC PL +C H FC CI +++ P CP R S+LR
Sbjct: 23 LDSSLRCLICHEYFRAPL-ITSCSHTFCSFCIRDYLREHPMCPACRAPEQESRLR 76
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 216 CPICSGVLEDPLQAPACEHAFCRACITEWISRQPTCPVDRQAVTASQL 359
C +C + P A C H FC +CI W S++ CP+ R + S++
Sbjct: 256 CSLCMEFIHCPA-ATECGHIFCWSCINGWTSKKSECPLCRAFSSPSKI 302
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 219 PICSGVLEDPLQAPACEHAFCRACITEWISRQPTCPVDRQAVTASQLRP 365
P+ G+ P + P C H C+ W+ RQ TCP+ R++V +Q P
Sbjct: 314 PLPRGLDMTPKRLP-CGHILHFHCLRNWLERQQTCPICRRSVIGNQSSP 361
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 36.7 bits (81), Expect = 0.009
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 138 IQSSTKKADMGFEIKRFQGDVDEELICPICSGVLE--DPLQAPA--CEHAFCRACITEWI 305
++ + K+A FE D +L CPIC + D QA C H F + C+ +W+
Sbjct: 83 VKRAVKEAWDSFE--PLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWL 140
Query: 306 SRQPTCPVDRQAV 344
TCP+ R+ V
Sbjct: 141 ENHCTCPLCRKEV 153
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 35.9 bits (79), Expect = 0.015
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 198 VDEELICPICSGVL---EDPLQAPACEHAFCRACITEWISRQPTCPVDRQAV 344
+DEE C IC + +D +Q P C+H F CI W+ TC + R V
Sbjct: 390 IDEEGECTICMEMFKINDDVIQLP-CKHYFHENCIKPWLRVNGTCAICRAPV 440
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 34.7 bits (76), Expect = 0.035
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 144 SSTKKADMGFEIKRFQGDVDEELICPICSGVLEDPLQAPACEHAFCRACITEWI-SRQPT 320
+S K + + F G + L+C + ++ + C H F R CI +W+ S Q +
Sbjct: 504 ASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNS 563
Query: 321 CPVDRQAVTASQLRP 365
CP+ R AS P
Sbjct: 564 CPLCRTKGVASASTP 578
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 34.7 bits (76), Expect = 0.035
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 123 KETDVIQSSTKK-ADMGFEIKRFQGDVDEELICPICSGVLEDPLQAPACEHAFCRACITE 299
+E D +Q KK A + + + + D +C IC P+ A C H FC C
Sbjct: 222 REWDSVQEKYKKGAKLEEGMVKNEKKEDIPFVCLICKKDYRSPI-ATTCGHHFCEQCAIT 280
Query: 300 WISRQPTC 323
+ PTC
Sbjct: 281 RYRKTPTC 288
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 34.3 bits (75), Expect = 0.047
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 201 DEELICPICSG--VLEDPLQAPACEHAFCRACITEWI-SRQPTCPV 329
DEE C IC +D L+ CEH F CI W+ + + +CP+
Sbjct: 200 DEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPL 245
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 33.9 bits (74), Expect = 0.062
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 213 ICPICSGVLEDPLQAPACEHAFCRACITEWISRQPTCPV 329
IC IC +++ C H +C C+ W+ +CP+
Sbjct: 1091 ICIICRDIIKQGF-ITTCGHLYCSFCLEAWLKHSSSCPM 1128
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 33.5 bits (73), Expect = 0.081
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 132 DVIQSSTKKADMGFEIKRFQGDVDEELICPICSGVLEDPLQAPACEHAFCRACITEWI 305
D + S +KA +G + + V E C IC P + C+H FC AC +++
Sbjct: 103 DAPEESLQKAGVGLSGSKQREVVHHEGTCEICYDEGCLPFFSAECDHEFCLACYRQYL 160
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 33.1 bits (72), Expect = 0.11
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 186 FQGDVDEELICPICSGVLEDPLQAPACEHAFCRACITEWISRQP-TCPV 329
F+ +V IC IC +++P + FC CI W+ R P CPV
Sbjct: 247 FEINVSTTDICKICGEKIKNPAVL-STGFVFCYPCIQVWLQRHPFKCPV 294
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 201 DEELICPICSGVLEDPLQAPACEHAFCRACITEWISRQPTC 323
D E +C C G+L+ P + +C H R C TE + P C
Sbjct: 788 DSEKVCDNCEGLLDVPFVSYSCLHLVHRDCATETVC--PKC 826
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 216 CPICSGVLED-PLQAPACEHAFCRACITEWIS---RQPTCPVDRQ 338
CP C+ ++ P+ C+H F CI W++ Q CP+DRQ
Sbjct: 35 CPQCTSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQCPMDRQ 79
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 31.9 bits (69), Expect = 0.25
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +3
Query: 210 LICPICSGVLEDPLQAPACEHAFCRACI-TEWISRQPTCP-VDRQAVTASQLRP 365
L C +C + + + P C+ FC CI T + CP R+ V L P
Sbjct: 280 LACTLCKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNCHRKDVLLDTLNP 333
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 31.9 bits (69), Expect = 0.25
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 264 CEHAFCRACITEWISRQPTCPVDRQ 338
C HAF CI+ W++ + CP+D +
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPLDNR 98
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 31.1 bits (67), Expect = 0.43
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 216 CPICSGVLEDPLQAPACEHAFCRACITEWI-SRQPTCPVDRQAVTASQLRPV 368
C +C+ C H FC CI + I +RQ CP+ + AS + P+
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPICGRGFGASDVIPI 678
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 31.1 bits (67), Expect = 0.43
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 177 IKRFQGDVDEELICPICSGVLEDPLQAPA---CEHAFCRACITEWISRQ 314
+K F+ + E CPIC +P+Q P C+HA C C++E I Q
Sbjct: 867 LKSFEALITE---CPICCN---EPIQNPLLLNCKHACCGDCLSEHIQYQ 909
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 30.7 bits (66), Expect = 0.57
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 204 EELICPICSGVLEDPLQAPACEHAFCRACITEWIS 308
E L C +C V+ + L C H CR C+T I+
Sbjct: 742 ETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVIT 776
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 29.9 bits (64), Expect = 1.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 264 CEHAFCRACITEWISRQPTCPVDR 335
C H + R C+ +W+ + CPV R
Sbjct: 647 CHHLYHRQCLLQWMETRSICPVCR 670
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +3
Query: 216 CPIC--SGVLEDPLQAPACEHAFCRACITEWI-SRQPTCP 326
C IC S D + A C+H F R CI +WI + CP
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACP 360
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 261 ACEHAFCRACITEWISR-QPTCPVDR 335
AC+H F +ACI +W++ +CP+ R
Sbjct: 784 ACKHFFHQACIDQWLTTGNNSCPLCR 809
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = +3
Query: 192 GDVDEELICPICSGVLEDPLQAPACEHAFCRACITEWISRQPTCPVDRQAVTASQLRP 365
GD+ + + P+ +++DP+ P + R+ I + T P +R +T + P
Sbjct: 929 GDIPDYFLDPLMFTIMKDPVVLPRSGISIDRSTIKAHLLSDATDPFNRTPLTLDDVTP 986
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 210 LICPICSGVLEDPLQAPACEHAFCRACITEWIS-RQPTCP 326
L C +C+ P C HAFC C+ + + TCP
Sbjct: 637 LKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCP 676
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 216 CPICSGVLEDPLQAPA--CEH-AFCRACITEWISRQPTCPVDRQAV 344
C IC + +D L+A C H F +CI W+ + TCP+ ++ V
Sbjct: 21 CVIC--LQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKRHV 64
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +3
Query: 255 APACEHAFCRACITEWISRQPTCPVD--RQAVTASQLRPV 368
A C H FC C E + CPV R+ +T + P+
Sbjct: 164 AAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITKKFIFPL 203
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 450 LDSLANHLVECEFNPKRPMPCEAGCGLVIPK 542
+D+L +HL E F R + CE GLV P+
Sbjct: 116 IDALESHLSEASFPSLRSVLCERYPGLVSPE 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,481,176
Number of Sequences: 5004
Number of extensions: 79463
Number of successful extensions: 192
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 884049604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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