Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_G05_e39_13.seq
(1545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 197 2e-50
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 191 1e-48
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 180 2e-45
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 144 1e-44
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 3e-07
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 31 3.2
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 3.2
01_05_0175 - 18936752-18937621,18938855-18941641 30 5.6
02_05_0250 + 27153048-27154453,27154546-27154885 29 7.5
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 197 bits (481), Expect = 2e-50
Identities = 88/156 (56%), Positives = 122/156 (78%), Gaps = 3/156 (1%)
Frame = +3
Query: 135 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH 311
M D E+ HFE+ D+GAS T+P Q +RKNG++++K+RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 312 LVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP- 488
VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P
Sbjct: 61 FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
Query: 489 DGDLGVQLRTDF-DSGKELLCTVLKSCGEECVIAVK 593
D L Q++ F + GK+++ TV+ + GEE + AVK
Sbjct: 121 DDTLTNQIKNGFGEEGKDMILTVMSAMGEEQICAVK 156
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 191 bits (465), Expect = 1e-48
Identities = 87/159 (54%), Positives = 121/159 (76%), Gaps = 6/159 (3%)
Frame = +3
Query: 135 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKSRPCK----IVEMSTSKTGKHGH 299
M D E+ HFE+ D+GAS T+P Q +RKNG++++K+RPCK +VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 300 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 479
AK H V IDIFNGKK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDL 133
Query: 480 KIP-DGDLGVQLRTDFDSGKELLCTVLKSCGEECVIAVK 593
++P D L Q++T F GK+L+ TV+ + GEE + A+K
Sbjct: 134 RLPTDDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALK 172
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 180 bits (439), Expect = 2e-45
Identities = 87/168 (51%), Positives = 118/168 (70%), Gaps = 15/168 (8%)
Frame = +3
Query: 135 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKSRPCK-------------IVEMS 272
M D E+ HFE+ D+GAS T+P Q +RKNG +++K+RPCK +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 273 TSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMA 452
TSKTGKHGHAK H V IDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT 1442
Query: 453 DNGDLREDLKIP-DGDLGVQLRTDFDSGKELLCTVLKSCGEECVIAVK 593
++G ++DL++P D L Q++ F GK+L+ TV+ + GEE + A+K
Sbjct: 1443 ESGGTKDDLRLPSDEALLTQIKDGFAEGKDLIVTVMSAMGEEQICALK 1490
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 144 bits (348), Expect(2) = 1e-44
Identities = 64/114 (56%), Positives = 88/114 (77%), Gaps = 1/114 (0%)
Frame = +3
Query: 255 KIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 434
K+VE+STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R +YQL DIS+DG
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDG 133
Query: 435 YLTLMADNGDLREDLKIP-DGDLGVQLRTDFDSGKELLCTVLKSCGEECVIAVK 593
+++L+ +NG+ ++DL++P D +L Q++ F GK+L+ TV+ + GEE + A+K
Sbjct: 134 FVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALK 187
Score = 55.6 bits (128), Expect(2) = 1e-44
Identities = 22/42 (52%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = +3
Query: 135 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKSRPCK 257
M D E+ HFE+ D+GAS T+P Q +RKNG++++K+RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.0 bits (124), Expect = 3e-07
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +3
Query: 387 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGVQLRTDFDSGKELLCTVLK 560
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 561 SCG 569
+ G
Sbjct: 106 AMG 108
>08_01_0036 -
267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 30.7 bits (66), Expect = 3.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 16 PRWRPL*XLVXSPGXAGNSARGRRSHITPYRN*NSVHTTQWVTLKIHISRP 168
P+ PL + + G S RG R ++ YRN S+H ++V K+ P
Sbjct: 372 PKHLPLDEFLRAGESVGLSLRGARMRLSIYRNWPSMHDNRFVLYKLTTQAP 422
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 3.2
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 378 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 497
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 29.9 bits (64), Expect = 5.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 749 VRTSRAYSXLCLSPEVQISGNVTRYH*NFANRFHRXPFI 865
+ +RAY CL PEV+ S V R++ A+RF R F+
Sbjct: 441 ITPTRAY---CLPPEVERSNRVLRHYHEVADRFLRVTFM 476
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +3
Query: 450 ADNGDLREDLKIPDGDLGVQLRTDFDSGKELLCTVLKSCGEECVIAVKANTA 605
A GD DL IPD + Q+ T+ S C V S G C AV A+ +
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNS 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,929,938
Number of Sequences: 37544
Number of extensions: 672906
Number of successful extensions: 1493
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4977304332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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