Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G05_e39_13.seq
         (1545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                97   8e-35
SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.4  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   29   10.0 

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 96.7 bits (230), Expect(2) = 8e-35
 Identities = 44/63 (69%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
 Frame = +3

Query: 123 THNTMGD-IEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGH 299
           T  TM + + DT F +G+SGAS T+P QCS+LRKNG V++K RPCKIVEMSTSKTGKHGH
Sbjct: 582 TPKTMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGH 641

Query: 300 AKV 308
           AKV
Sbjct: 642 AKV 644



 Score = 70.1 bits (164), Expect(2) = 8e-35
 Identities = 29/62 (46%), Positives = 44/62 (70%)
 Frame = +3

Query: 408 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGVQLRTDFDSGKELLCTVLKSCGEECVIA 587
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+ GEE V+ 
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702

Query: 588 VK 593
           VK
Sbjct: 703 VK 704


>SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 237 TLRNRSYAGRSTAWEMLP-RHRSLRSRNVYLQCHPLCC 127
           T++  S A R+  +EM P + R+ +S+ +YL C  L C
Sbjct: 792 TVKFNSMASRAQRFEMAPFKFRNAKSKTIYLHCRVLVC 829


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -3

Query: 568 PQDFSTVHSNSLPLSKSVRSCTPRSPSGILRSSRRSPLSAMRVR 437
           P+  S V S +LP+   V  C P SPS I RS    P     VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,811,528
Number of Sequences: 59808
Number of extensions: 770112
Number of successful extensions: 3275
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3258
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)