Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G05_e39_13.seq
         (1545 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    27   1.5  
AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          27   1.5  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 239 QHYETVLTQGGALHGKCCRGTGVSGLEMCIFNVTHCVV 126
           QH + V+ +G  L G   R T      MCI  V +C+V
Sbjct: 859 QHIDDVVARGNQLLGVVIRTTNEFRNPMCIKAVYNCIV 896



 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 210 RSTAWEMLPRHRSLRSRNVYLQCHPLCCVY 121
           +  A+      R  RSR++Y   H L C Y
Sbjct: 418 KRAAYRHYQTRRCQRSRSIYFDTHSLYCSY 447


>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 180 HRSLRSRNVYLQCHPLCCVY*VSITVR 100
           HR L+S+N+ ++ +  CC+  + + VR
Sbjct: 185 HRDLKSKNILVKSNLTCCIGDLGLAVR 211


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,338
Number of Sequences: 2352
Number of extensions: 25356
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 181658565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)