Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_G05_e39_13.seq
(1545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 196 5e-50
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 186 3e-47
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 31 1.7
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 31 2.2
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 31 2.2
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 31 2.9
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 31 2.9
Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical pr... 30 3.8
Z77659-1|CAB01164.1| 401|Caenorhabditis elegans Hypothetical pr... 29 8.8
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 196 bits (477), Expect = 5e-50
Identities = 94/154 (61%), Positives = 117/154 (75%), Gaps = 2/154 (1%)
Frame = +3
Query: 147 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 326
+D HF TGDSGA+ATFP QCSALRKN VM+K RPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 327 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 503
IF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +LG
Sbjct: 67 IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125
Query: 504 VQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 602
Q+R ++ + +L V+ + GEE ++ K +T
Sbjct: 126 QQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 186 bits (454), Expect = 3e-47
Identities = 88/154 (57%), Positives = 117/154 (75%), Gaps = 2/154 (1%)
Frame = +3
Query: 147 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 326
++ F++ +SGA+ATFP QCSALRKN VM++ RPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 327 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 503
IF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159
Query: 504 VQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 602
+R + + +L V+ +CGEE ++ K +T
Sbjct: 160 NTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 31.5 bits (68), Expect = 1.7
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 372 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGVQLRTDFDSGKELL 545
N +P +K++ Y L ++ GY+ + GDL+ KI D + ++ G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKAMLRPDGYERGRLRH 630
Query: 546 CTVLKSCGEEC 578
++K CG++C
Sbjct: 631 AALVKECGDKC 641
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -2
Query: 278 GSGHLDNLAGATLQHYETVLTQGGALHG--KCCRGTGVSGL-EMCIFNVTHCVVCTEFQL 108
G G++ + T Q E ++ + LH + G G S L +MC FN C + TEF+L
Sbjct: 297 GYGNMTDQVAITTQAKEKMILKMSGLHPQRRAALGYGKSELIKMCSFNGQQCNIDTEFKL 356
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -2
Query: 278 GSGHLDNLAGATLQHYETVLTQGGALHG--KCCRGTGVSGL-EMCIFNVTHCVVCTEFQL 108
G G++ + T Q E ++ + LH + G G S L +MC FN C + TEF+L
Sbjct: 297 GYGNMTDQVAITTQAKEKMILKMSGLHPQRRAALGYGKSELIKMCSFNGQQCNIDTEFKL 356
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 403 TTN*PISLTTATSPSWLTTVTCVKTSRYRTAISAYNCVPTLTAARSYCA 549
TT PI++ T SP+ TT T+R T + PT T + S CA
Sbjct: 485 TTTAPITVPTV-SPTTTTTRQTTTTARTSTTTTTTQAPPTTTTSTSQCA 532
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 403 TTN*PISLTTATSPSWLTTVTCVKTSRYRTAISAYNCVPTLTAARSYCA 549
TT PI++ T SP+ TT T+R T + PT T + S CA
Sbjct: 485 TTTAPITVPTV-SPTTTTTRQTTTTARTSTTTTTTQAPPTTTTSTSQCA 532
>Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical
protein M163.5 protein.
Length = 435
Score = 30.3 bits (65), Expect = 3.8
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3
Query: 562 DFSTVHSNSLPLSKSVRSCTPRSPSGILRSSRRSPLSA 449
D +T HS+S K + T +SPS I SRRS SA
Sbjct: 314 DLTTKHSSSNSPHKLAEASTSKSPSPISECSRRSSSSA 351
>Z77659-1|CAB01164.1| 401|Caenorhabditis elegans Hypothetical
protein F23B12.1 protein.
Length = 401
Score = 29.1 bits (62), Expect = 8.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 693 M*YGFFFDCKKNYKFVIITL*MLSWFICRELC 598
M YGF+ +CKK Y + L+ F C LC
Sbjct: 199 MQYGFYLECKKRYSVALYDAFQLA-FNCMPLC 229
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,367,357
Number of Sequences: 27780
Number of extensions: 566086
Number of successful extensions: 1284
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4452547242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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