Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G05_e39_13.seq
         (1545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    26   0.76 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    26   0.76 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   5.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   5.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   7.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   7.1  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   9.3  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 26.2 bits (55), Expect = 0.76
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 223 FLRRAEHCMGNVAEAPESPVSKCVSSMSPIVL 128
           +LRR   C   + EAP  PV + + S++P+VL
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 26.2 bits (55), Expect = 0.76
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 223 FLRRAEHCMGNVAEAPESPVSKCVSSMSPIVL 128
           +LRR   C   + EAP  PV + + S++P+VL
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 279 WKWTSRQSCRGDSSTLR 229
           W W   Q+C G +S  R
Sbjct: 111 WSWAKNQNCSGITSVYR 127


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 880 DAFYNTGLXMYXRGASGSTLF 942
           + FYN G  +  +GA G T F
Sbjct: 238 ETFYNNGDYIIRQGARGDTFF 258


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 373 LWVEGQISSYFLPLNISM 320
           LW   QISS  +P N++M
Sbjct: 46  LWTGKQISSLIIPGNVNM 63


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 324 DIFNGKKYEDIC 359
           D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 210 RSTAWEMLPRHRSLRSRNVYLQC 142
           RST+ E L    +++S NV+  C
Sbjct: 35  RSTSLEELANRNAIQSDNVFANC 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,565
Number of Sequences: 438
Number of extensions: 7279
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54190125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)