Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G05_e39_13.seq
         (1545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...   201   1e-51
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...   190   2e-48
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...   190   3e-48
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide...    31   2.0  
At3g26570.2 68416.m03317 phosphate transporter family protein co...    31   2.7  
At3g26570.1 68416.m03316 phosphate transporter family protein co...    31   2.7  
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    29   8.2  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score =  201 bits (490), Expect = 1e-51
 Identities = 87/150 (58%), Positives = 118/150 (78%), Gaps = 1/150 (0%)
 Frame = +3

Query: 147 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 326
           E+ HFE+ D+GAS T+P Q   +RKNG++++K+RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 327 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LG 503
           IF  KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG  ++DLK+P+ D L 
Sbjct: 64  IFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLL 123

Query: 504 VQLRTDFDSGKELLCTVLKSCGEECVIAVK 593
            Q+++ FD GK+L+ +V+ + GEE + A+K
Sbjct: 124 QQIKSGFDDGKDLVVSVMSAMGEEQINALK 153


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score =  190 bits (463), Expect = 2e-48
 Identities = 83/150 (55%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
 Frame = +3

Query: 147 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 326
           ++ HFE  +SGAS T+P     +RK G +++K+RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 327 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 503
           IF  KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G  ++DLK+P D  L 
Sbjct: 64  IFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLT 123

Query: 504 VQLRTDFDSGKELLCTVLKSCGEECVIAVK 593
            Q+R  FD GK+++ +V+ S GEE + AVK
Sbjct: 124 AQMRLGFDEGKDIVVSVMSSMGEEQICAVK 153


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score =  190 bits (462), Expect = 3e-48
 Identities = 83/150 (55%), Positives = 113/150 (75%), Gaps = 1/150 (0%)
 Frame = +3

Query: 147 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 326
           ++ HFE+ D+GAS T+P Q   +RK G +++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 327 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 503
           IF  KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG  ++DLK+P D  L 
Sbjct: 64  IFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALL 123

Query: 504 VQLRTDFDSGKELLCTVLKSCGEECVIAVK 593
            QL+  F+ GK+++ +V+ + GEE + A+K
Sbjct: 124 TQLKNGFEEGKDIVVSVMSAMGEEQMCALK 153


>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
           identical to RNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|8248473|gb|AAF74208
          Length = 1196

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 749 VRTSRAYSXLCLSPEVQISGNVTRYH*NFANRFHRXPFIXATV-LMHSIILDY 904
           +  +RAY   CL PEV++S  V R +   A RF R  F+  ++  ++S +L Y
Sbjct: 416 ITPTRAY---CLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSY 465


>At3g26570.2 68416.m03317 phosphate transporter family protein
           contains Pfam profile: PF01384 phosphate transporter
           family
          Length = 587

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 568 PQDFSTVHSNSLPLSKSVRSCTPRSPSGILRSSRRSP 458
           P  FS+V ++SL L K+   CTPRS  G   S + SP
Sbjct: 4   PYRFSSVRNHSL-LLKTSHLCTPRSALGCCFSPKESP 39


>At3g26570.1 68416.m03316 phosphate transporter family protein
           contains Pfam profile: PF01384 phosphate transporter
           family
          Length = 613

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 568 PQDFSTVHSNSLPLSKSVRSCTPRSPSGILRSSRRSP 458
           P  FS+V ++SL L K+   CTPRS  G   S + SP
Sbjct: 30  PYRFSSVRNHSL-LLKTSHLCTPRSALGCCFSPKESP 65


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
            SP|P35207 Antiviral protein SKI2 {Saccharomyces
            cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
            box helicase, PF00271: Helicase conserved C-terminal
            domain
          Length = 1347

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
 Frame = +3

Query: 420  ISDDGYLTLMADNG--DLREDLKIPDGDLGVQLR----TDFDSGKELLCTV 554
            +SD+  L + A  G  D+ +++   D DL VQ++     + +SG+EL+CTV
Sbjct: 1141 MSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSGEELICTV 1191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,746,669
Number of Sequences: 28952
Number of extensions: 515615
Number of successful extensions: 1089
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4144594560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)