Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G04_e31_14.seq
         (1561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   194   3e-50
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   194   3e-50
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    32   0.19 
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   9.3  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  194 bits (473), Expect = 3e-50
 Identities = 88/135 (65%), Positives = 108/135 (80%)
 Frame = +2

Query: 95  QTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKCPFTGN 274
           Q+ER+FQKQP +F N KKG G        R++KDVGLGFKTP EA+ G Y+DKKCPF G 
Sbjct: 8   QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60

Query: 275 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 454
           VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+
Sbjct: 61  VSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDV 119

Query: 455 VTIGECRPLSKTVRF 499
           VT+G+CRPLSKTVRF
Sbjct: 120 VTVGQCRPLSKTVRF 134


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  194 bits (473), Expect = 3e-50
 Identities = 88/135 (65%), Positives = 108/135 (80%)
 Frame = +2

Query: 95  QTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKCPFTGN 274
           Q+ER+FQKQP +F N KKG G        R++KDVGLGFKTP EA+ G Y+DKKCPF G 
Sbjct: 8   QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60

Query: 275 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 454
           VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+
Sbjct: 61  VSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDV 119

Query: 455 VTIGECRPLSKTVRF 499
           VT+G+CRPLSKTVRF
Sbjct: 120 VTVGQCRPLSKTVRF 134


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 302 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 481
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 482 SKTVRF 499
           S T RF
Sbjct: 64  SATKRF 69


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 454 DVSDFHVPEARR*MNRHVPVSL 389
           DV+ + VPEARR   RH PV L
Sbjct: 481 DVNYYPVPEARRSNMRHRPVGL 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,286,882
Number of Sequences: 5004
Number of extensions: 76333
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 878103082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)