BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030623sawa_G04_e31_14.seq (1561 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value X06617-1|CAA29834.1| 158|Homo sapiens protein ( Human mRNA for ... 240 1e-62 BC100025-1|AAI00026.1| 158|Homo sapiens RPS11 protein protein. 240 1e-62 BC070224-1|AAH70224.1| 158|Homo sapiens ribosomal protein S11 p... 240 1e-62 BC016378-1|AAH16378.1| 158|Homo sapiens ribosomal protein S11 p... 240 1e-62 BC010028-1|AAH10028.1| 158|Homo sapiens ribosomal protein S11 p... 240 1e-62 BC007945-1|AAH07945.1| 158|Homo sapiens RPS11 protein protein. 240 1e-62 BC007603-1|AAH07603.1| 158|Homo sapiens ribosomal protein S11 p... 240 1e-62 BC007283-1|AAH07283.1| 158|Homo sapiens ribosomal protein S11 p... 240 1e-62 AB028893-2|BAA88215.1| 158|Homo sapiens ribosomal protein S11 p... 240 1e-62 AB007152-1|BAA25818.1| 83|Homo sapiens ribosomal protein S11 p... 133 2e-30 U52144-1|AAC50455.1| 419|Homo sapiens isocitrate dehydrogenase ... 42 0.006 >X06617-1|CAA29834.1| 158|Homo sapiens protein ( Human mRNA for ribosomal protein S11. ). Length = 158 Score = 240 bits (587), Expect = 1e-62 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%) Frame = +2 Query: 86 MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259 MAD QTER++QKQPT+F N+K+ + G K RY+K++GLGFKTP+EA+EGTYIDKKC Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60 Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439 PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120 Query: 440 EIGDIVTIGECRPLSKTVRF 499 +IGDIVT+GECRPLSKTVRF Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140 >BC100025-1|AAI00026.1| 158|Homo sapiens RPS11 protein protein. Length = 158 Score = 240 bits (587), Expect = 1e-62 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%) Frame = +2 Query: 86 MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259 MAD QTER++QKQPT+F N+K+ + G K RY+K++GLGFKTP+EA+EGTYIDKKC Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60 Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439 PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120 Query: 440 EIGDIVTIGECRPLSKTVRF 499 +IGDIVT+GECRPLSKTVRF Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140 >BC070224-1|AAH70224.1| 158|Homo sapiens ribosomal protein S11 protein. Length = 158 Score = 240 bits (587), Expect = 1e-62 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%) Frame = +2 Query: 86 MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259 MAD QTER++QKQPT+F N+K+ + G K RY+K++GLGFKTP+EA+EGTYIDKKC Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60 Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439 PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120 Query: 440 EIGDIVTIGECRPLSKTVRF 499 +IGDIVT+GECRPLSKTVRF Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140 >BC016378-1|AAH16378.1| 158|Homo sapiens ribosomal protein S11 protein. Length = 158 Score = 240 bits (587), Expect = 1e-62 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%) Frame = +2 Query: 86 MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259 MAD QTER++QKQPT+F N+K+ + G K RY+K++GLGFKTP+EA+EGTYIDKKC Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60 Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439 PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120 Query: 440 EIGDIVTIGECRPLSKTVRF 499 +IGDIVT+GECRPLSKTVRF Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140 >BC010028-1|AAH10028.1| 158|Homo sapiens ribosomal protein S11 protein. Length = 158 Score = 240 bits (587), Expect = 1e-62 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%) Frame = +2 Query: 86 MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259 MAD QTER++QKQPT+F N+K+ + G K RY+K++GLGFKTP+EA+EGTYIDKKC Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60 Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439 PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120 Query: 440 EIGDIVTIGECRPLSKTVRF 499 +IGDIVT+GECRPLSKTVRF Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140 >BC007945-1|AAH07945.1| 158|Homo sapiens RPS11 protein protein. Length = 158 Score = 240 bits (587), Expect = 1e-62 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%) Frame = +2 Query: 86 MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259 MAD QTER++QKQPT+F N+K+ + G K RY+K++GLGFKTP+EA+EGTYIDKKC Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60 Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439 PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120 Query: 440 EIGDIVTIGECRPLSKTVRF 499 +IGDIVT+GECRPLSKTVRF Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140 >BC007603-1|AAH07603.1| 158|Homo sapiens ribosomal protein S11 protein. Length = 158 Score = 240 bits (587), Expect = 1e-62 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%) Frame = +2 Query: 86 MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259 MAD QTER++QKQPT+F N+K+ + G K RY+K++GLGFKTP+EA+EGTYIDKKC Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60 Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439 PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120 Query: 440 EIGDIVTIGECRPLSKTVRF 499 +IGDIVT+GECRPLSKTVRF Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140 >BC007283-1|AAH07283.1| 158|Homo sapiens ribosomal protein S11 protein. Length = 158 Score = 240 bits (587), Expect = 1e-62 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%) Frame = +2 Query: 86 MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259 MAD QTER++QKQPT+F N+K+ + G K RY+K++GLGFKTP+EA+EGTYIDKKC Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60 Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439 PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120 Query: 440 EIGDIVTIGECRPLSKTVRF 499 +IGDIVT+GECRPLSKTVRF Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140 >AB028893-2|BAA88215.1| 158|Homo sapiens ribosomal protein S11 protein. Length = 158 Score = 240 bits (587), Expect = 1e-62 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%) Frame = +2 Query: 86 MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259 MAD QTER++QKQPT+F N+K+ + G K RY+K++GLGFKTP+EA+EGTYIDKKC Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60 Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439 PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120 Query: 440 EIGDIVTIGECRPLSKTVRF 499 +IGDIVT+GECRPLSKTVRF Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140 >AB007152-1|BAA25818.1| 83|Homo sapiens ribosomal protein S11 protein. Length = 83 Score = 133 bits (321), Expect = 2e-30 Identities = 59/65 (90%), Positives = 63/65 (96%) Frame = +2 Query: 305 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 484 VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLS Sbjct: 1 VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLS 60 Query: 485 KTVRF 499 KTVRF Sbjct: 61 KTVRF 65 >U52144-1|AAC50455.1| 419|Homo sapiens isocitrate dehydrogenase protein. Length = 419 Score = 41.9 bits (94), Expect = 0.006 Identities = 16/27 (59%), Positives = 22/27 (81%) Frame = -1 Query: 514 DLQYIEPDCLGKRPALANCDDVSDFHV 434 DL+++E CL +RPALA+CDDV+D V Sbjct: 18 DLEHVEAHCLAQRPALAHCDDVTDLDV 44 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 164,613,916 Number of Sequences: 237096 Number of extensions: 3235968 Number of successful extensions: 11955 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11829 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11946 length of database: 76,859,062 effective HSP length: 94 effective length of database: 54,572,038 effective search space used: 23193116150 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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