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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G04_e31_14.seq
         (1561 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for ...   240   1e-62
BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.       240   1e-62
BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11 p...   240   1e-62
BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11 p...   240   1e-62
BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11 p...   240   1e-62
BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.       240   1e-62
BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11 p...   240   1e-62
BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11 p...   240   1e-62
AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11 p...   240   1e-62
AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11 p...   133   2e-30
U52144-1|AAC50455.1|  419|Homo sapiens isocitrate dehydrogenase ...    42   0.006

>X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for
           ribosomal protein S11. ).
          Length = 158

 Score =  240 bits (587), Expect = 1e-62
 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%)
 Frame = +2

Query: 86  MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259
           MAD QTER++QKQPT+F N+K+ + G     K  RY+K++GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 440 EIGDIVTIGECRPLSKTVRF 499
           +IGDIVT+GECRPLSKTVRF
Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140


>BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  240 bits (587), Expect = 1e-62
 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%)
 Frame = +2

Query: 86  MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259
           MAD QTER++QKQPT+F N+K+ + G     K  RY+K++GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 440 EIGDIVTIGECRPLSKTVRF 499
           +IGDIVT+GECRPLSKTVRF
Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140


>BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  240 bits (587), Expect = 1e-62
 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%)
 Frame = +2

Query: 86  MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259
           MAD QTER++QKQPT+F N+K+ + G     K  RY+K++GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 440 EIGDIVTIGECRPLSKTVRF 499
           +IGDIVT+GECRPLSKTVRF
Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140


>BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  240 bits (587), Expect = 1e-62
 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%)
 Frame = +2

Query: 86  MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259
           MAD QTER++QKQPT+F N+K+ + G     K  RY+K++GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 440 EIGDIVTIGECRPLSKTVRF 499
           +IGDIVT+GECRPLSKTVRF
Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140


>BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  240 bits (587), Expect = 1e-62
 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%)
 Frame = +2

Query: 86  MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259
           MAD QTER++QKQPT+F N+K+ + G     K  RY+K++GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 440 EIGDIVTIGECRPLSKTVRF 499
           +IGDIVT+GECRPLSKTVRF
Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140


>BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  240 bits (587), Expect = 1e-62
 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%)
 Frame = +2

Query: 86  MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259
           MAD QTER++QKQPT+F N+K+ + G     K  RY+K++GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 440 EIGDIVTIGECRPLSKTVRF 499
           +IGDIVT+GECRPLSKTVRF
Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140


>BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  240 bits (587), Expect = 1e-62
 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%)
 Frame = +2

Query: 86  MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259
           MAD QTER++QKQPT+F N+K+ + G     K  RY+K++GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 440 EIGDIVTIGECRPLSKTVRF 499
           +IGDIVT+GECRPLSKTVRF
Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140


>BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  240 bits (587), Expect = 1e-62
 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%)
 Frame = +2

Query: 86  MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259
           MAD QTER++QKQPT+F N+K+ + G     K  RY+K++GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 440 EIGDIVTIGECRPLSKTVRF 499
           +IGDIVT+GECRPLSKTVRF
Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140


>AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  240 bits (587), Expect = 1e-62
 Identities = 111/140 (79%), Positives = 127/140 (90%), Gaps = 2/140 (1%)
 Frame = +2

Query: 86  MAD-QTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKC 259
           MAD QTER++QKQPT+F N+K+ + G     K  RY+K++GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 260 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 439
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 440 EIGDIVTIGECRPLSKTVRF 499
           +IGDIVT+GECRPLSKTVRF
Sbjct: 121 QIGDIVTVGECRPLSKTVRF 140


>AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11
           protein.
          Length = 83

 Score =  133 bits (321), Expect = 2e-30
 Identities = 59/65 (90%), Positives = 63/65 (96%)
 Frame = +2

Query: 305 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 484
           VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLS
Sbjct: 1   VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLS 60

Query: 485 KTVRF 499
           KTVRF
Sbjct: 61  KTVRF 65


>U52144-1|AAC50455.1|  419|Homo sapiens isocitrate dehydrogenase
           protein.
          Length = 419

 Score = 41.9 bits (94), Expect = 0.006
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = -1

Query: 514 DLQYIEPDCLGKRPALANCDDVSDFHV 434
           DL+++E  CL +RPALA+CDDV+D  V
Sbjct: 18  DLEHVEAHCLAQRPALAHCDDVTDLDV 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,613,916
Number of Sequences: 237096
Number of extensions: 3235968
Number of successful extensions: 11955
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11946
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23193116150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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