Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G04_e31_14.seq
         (1561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   198   6e-51
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           193   2e-49
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           188   9e-48
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    38   0.024
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    37   0.041
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila...    31   2.7  
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    30   3.6  
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    30   4.8  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  198 bits (484), Expect = 6e-51
 Identities = 92/139 (66%), Positives = 113/139 (81%), Gaps = 1/139 (0%)
 Frame = +2

Query: 86  MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKCP 262
           MA+QTE++F KQP VFL+ KK G G +  +   R+ K++GLGFKTPREA+EGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 263 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 442
           FTG VSIRGRIL+G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VK 119

Query: 443 IGDIVTIGECRPLSKTVRF 499
            GD VTIG+CRPLSKTVRF
Sbjct: 120 EGDRVTIGQCRPLSKTVRF 138


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  193 bits (471), Expect = 2e-49
 Identities = 88/139 (63%), Positives = 110/139 (79%), Gaps = 1/139 (0%)
 Frame = +2

Query: 86  MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKCP 262
           MA+QTE++F KQP VFL+ KK G G +  +   R+ K++GLGFKTPREA++G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 263 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 442
           FTG VSIRGRIL G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119

Query: 443 IGDIVTIGECRPLSKTVRF 499
            GD + IG+CRPLSKTVRF
Sbjct: 120 EGDHIIIGQCRPLSKTVRF 138


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  188 bits (458), Expect = 9e-48
 Identities = 87/139 (62%), Positives = 108/139 (77%), Gaps = 1/139 (0%)
 Frame = +2

Query: 86  MADQTERSFQKQPTVFLNRK-KGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKCP 262
           MA+QTE++F KQP VFL+ K  G G +  +   R+ K++GLGFKTPREA++G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 263 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 442
           FTG VSIRGRIL G     KMQRTI++RR+YLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119

Query: 443 IGDIVTIGECRPLSKTVRF 499
            GD V IG+CRPLSKTVRF
Sbjct: 120 EGDHVIIGQCRPLSKTVRF 138


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 37.5 bits (83), Expect = 0.024
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 302 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 478
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +   RP
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 479 LSK 487
           LSK
Sbjct: 63  LSK 65


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 36.7 bits (81), Expect = 0.041
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +2

Query: 290 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 469
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 470 CRPLSK 487
            RPLSK
Sbjct: 60  SRPLSK 65


>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
           to SP|P36175 O-sialoglycoprotein endopeptidase (EC
           3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
           contains Pfam profile PF00814: Glycoprotease family
          Length = 480

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 176 PLRYHKDVGL---GFKTP-REAVEGTYIDKKCP 262
           P++YHKD      G KT  R A+E   ID KCP
Sbjct: 285 PMKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +1

Query: 541 FQKVLNKLRYXXXXXXXTRGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNFXRLAAH 720
           F+ ++ +L          R      +RP  +R+    PS    +    + LP+     +H
Sbjct: 55  FRSIVQQLTGSPSRESLPRPPQNNSLRPQNTRLQRIRPSPLTQLNRPAVPLPSMAPPQSH 114

Query: 721 PPFASWRNSXEAPHRSPFP-TVAQP*MAN 804
           P FA      + PH+ PFP T  QP M +
Sbjct: 115 PQFAR-----QPPHQPPFPQTTQQPMMGH 138


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +2

Query: 290 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 469
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 470 CRPLSKTVRF 499
            RP+SKT  F
Sbjct: 109 SRPISKTKSF 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,499,842
Number of Sequences: 28952
Number of extensions: 432552
Number of successful extensions: 832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4192787520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)