Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G03_e23_13.seq
         (1560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    77   7e-15
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    30   0.75 
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    29   1.7  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    28   4.0  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    28   4.0  

>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 77.0 bits (181), Expect = 7e-15
 Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
 Frame = +2

Query: 293 YGSYFLTLKVESDKYLPWNEKAFEIDGGKIVKSKV----DSLRSLSKFDLVFNCTGMGAK 460
           YG    T  + +  YL +  K     G +  K ++    +++    +  +VFNCTG+ A 
Sbjct: 134 YGHKATTFLINAPHYLNYMYKLLIEAGVEFEKKELSHIKETVEETPEASVVFNCTGLWAS 193

Query: 461 YL--CNDNDLVPIRGQVIRIKAPWI-KTSFYG--DYDTYVIPGS-NGLATLGGVRQYDSY 622
            L    D D+ P RG V+ +KAP + +T      + DTY+IP   NG    GG  Q  ++
Sbjct: 194 KLGGVEDPDVYPTRGHVVLVKAPHVTETRILNGKNSDTYIIPRPLNGGVICGGFMQPGNW 253

Query: 623 NLQVCKHDAAAILERCYNLVPSL------KGAEIISHKVGLRPHRT-PVRVEAEIV--DS 775
           + ++   D   IL+R   L+P L      +GAEII   VG RP R    RVE ++V   S
Sbjct: 254 DREIHPEDTLDILKRTSALMPELFHGKGPEGAEIIQECVGFRPSRKGGARVELDVVPGTS 313

Query: 776 LKVVHCSGHGGT 811
           + +VH  G  GT
Sbjct: 314 VPLVHDYGASGT 325


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 23/84 (27%), Positives = 36/84 (42%)
 Frame = +2

Query: 314 LKVESDKYLPWNEKAFEIDGGKIVKSKVDSLRSLSKFDLVFNCTGMGAKYLCNDNDLVPI 493
           LK+E  KY      A+  D   I   K+  ++ +     +   T     YL   N+L+  
Sbjct: 472 LKLEPFKYHHQGALAYVGDEKAIADLKLPFMKKMLPLQGIVGHTFWRLAYL---NELISA 528

Query: 494 RGQVIRIKAPWIKTSFYGDYDTYV 565
           R Q + +   W+KT  +G YD  V
Sbjct: 529 RSQFM-VLIDWLKTRLFGRYDAKV 551


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
 Frame = +2

Query: 560 YVIPGSNGLATLGGVRQYDSYNLQVCKHDAAA--ILERCYNLV------PSLKGAEIISH 715
           YV PG+ G A+ G   + ++ N+ VC  +      L++  NLV      P ++G E    
Sbjct: 32  YVAPGNGGTASNGAESKMENVNIGVCDFEQLVKFALDKDVNLVIPGPELPLVEGIEGHFR 91

Query: 716 KVGL---RPHRTPVRVEAEIVDSLKVVH 790
           +VG+    P     R+E   V S   +H
Sbjct: 92  RVGIPCFGPSALAARMEGSKVFSKDFMH 119


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 447 PVQLKTKSNFDSDLKESTLDLTIFPPSISNAFSFQ 343
           P        F S +  +T + T+FP S +N+FSF+
Sbjct: 276 PSSFPENGGFPSFVDANTHEQTLFPSSATNSFSFE 310


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 898 VIIYFFRXLLEXQHPVSQHLQQYRGRTLHXTTVSGAMDHFQTVD 767
           +I   F  L E Q+ ++ +   Y+  T   TTV    + F T+D
Sbjct: 344 IIHKVFEKLSEDQNDIAPYPNPYQNFTTTNTTVKNPFERFDTID 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,652,388
Number of Sequences: 5004
Number of extensions: 87443
Number of successful extensions: 219
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 878103082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)