Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G03_e23_13.seq
         (1560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0530 - 4164590-4165264,4165378-4165467,4167482-4168011,416...    31   3.3  
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430...    29   7.5  
01_05_0138 + 18516689-18518161                                         29   7.5  
01_01_0127 + 1164871-1165346,1165835-1165934,1166007-1166102,116...    29   7.5  

>11_01_0530 -
           4164590-4165264,4165378-4165467,4167482-4168011,
           4168094-4168603,4172207-4172432
          Length = 676

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 738 LCGRSPTLCEIISAPFKDGTRL*HLSKMAAAS 643
           L  ++P LC I++A  KDG    HL+  AAAS
Sbjct: 353 LAVKNPMLCGIVNAQDKDGNTALHLAVAAAAS 384


>06_03_1311 -
           29241884-29242054,29242802-29242879,29242968-29243049,
           29243141-29243212,29243316-29243437,29243541-29243596,
           29244264-29244333,29244435-29244518,29244599-29244667,
           29244855-29244928,29245014-29245125,29245220-29245510
          Length = 426

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 470 NDNDLVPIRGQVIRIKAPWIKTSFYGDYDTYVIPGSNGLATLGGVRQYDSYNLQVCK 640
           NDN LVP   ++++ K P I        D Y   G +G+    GV   D    Q+CK
Sbjct: 191 NDNGLVPRTIRLLKDKFPDIVVYTDVALDPYSSDGHDGIVREDGVIMNDETVYQLCK 247


>01_05_0138 + 18516689-18518161
          Length = 490

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  SHGNFWQEXHDVTGIA*TLASCLCLRIY 182
           SHG FW+E  D+ G    LA C C R +
Sbjct: 315 SHGGFWEEIEDLDGRVLFLARC-CSRAF 341


>01_01_0127 +
           1164871-1165346,1165835-1165934,1166007-1166102,
           1166182-1166265,1166809-1166871
          Length = 272

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 834 STGGAHYTVPPCPEQWTTFKLSTISAST 751
           ST  A    PP P +WTT  ++++ A+T
Sbjct: 19  STAAALAAAPPTPTEWTTAPVASVGAAT 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,803,567
Number of Sequences: 37544
Number of extensions: 598180
Number of successful extensions: 1166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5035314872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)