Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G03_e23_13.seq
         (1560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57867| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   6e-21
SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)                   33   0.62 
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          33   0.62 
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 32   1.4  
SB_15748| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_45174| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.3  

>SB_57867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 99.5 bits (237), Expect = 6e-21
 Identities = 59/145 (40%), Positives = 77/145 (53%), Gaps = 16/145 (11%)
 Frame = +2

Query: 422 FDLVFNCTGMGAKYLCNDNDLVPIRGQVIRIKAPWIKT-SFYGDYDTYVIPGSNGL---- 586
           FD+V NC G+GAK L  D  + PIRGQ++R+KAPWIK    Y  Y+       N +    
Sbjct: 107 FDVVVNCCGLGAKGLAQDRHMFPIRGQILRVKAPWIKQFILYEKYEDLKAGRLNDIIPQM 166

Query: 587 --ATLGGVRQYDSYNLQVCKHDAAAILERCYNLVPSLKGAEIISHKVGLRPHRTPVRVEA 760
               LGG  Q  S+N      D   I+E    ++P+LK AE+IS+  GLRP R  VR+E 
Sbjct: 167 DHVVLGGCAQAGSFNTVPTLQDTVNIIEDTSKVIPALKNAEVISNWSGLRPGRKTVRLEK 226

Query: 761 EI---------VDSLKVVHCSGHGG 808
           E+         +  L VVH  GHGG
Sbjct: 227 EVMLFKDESGCIIKLNVVHNYGHGG 251


>SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)
          Length = 456

 Score = 33.1 bits (72), Expect = 0.62
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
 Frame = +2

Query: 299 SYFLTLKVESDKYLPWNEKAFEIDGGKIVK--------SKVDSLRSLSKFDLVFNCTGMG 454
           S+++ L + S  Y+ W  +  +  G K V+        S+++SL +    D V NCTG+ 
Sbjct: 134 SFWVPL-INSPSYMMWLYQQCQQLGVKYVRASLQGTLLSQLNSLMTSYNADFVINCTGLA 192

Query: 455 AKYLCNDNDLVP 490
           AK L  D+ + P
Sbjct: 193 AKELATDDKVYP 204


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 33.1 bits (72), Expect = 0.62
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = -1

Query: 486 TKSLSLHRYFAPIPVQLKTKSNFDSDLKESTLDLTIFPPSISNAFSFQGKYLSLSTFNVR 307
           + SLS+    + +P    T S+  SD   S+  L++FP S S    F     SLS F   
Sbjct: 591 SSSLSVFLTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSDFLTS 650

Query: 306 KYDPYFQPSPHNVSSSFSTA 247
                  P+  ++ S F T+
Sbjct: 651 SSSLSVFPTSSSLPSDFLTS 670



 Score = 33.1 bits (72), Expect = 0.62
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = -1

Query: 486  TKSLSLHRYFAPIPVQLKTKSNFDSDLKESTLDLTIFPPSISNAFSFQGKYLSLSTFNVR 307
            + SLS+    + +P    T S+  SD   S+  L++FP S S    F     SLS F   
Sbjct: 856  SSSLSVFPTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSDFLTS 915

Query: 306  KYDPYFQPSPHNVSSSFSTA 247
                   P+  ++ S F T+
Sbjct: 916  SSSLSVFPTSSSLPSDFVTS 935



 Score = 33.1 bits (72), Expect = 0.62
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = -1

Query: 486  TKSLSLHRYFAPIPVQLKTKSNFDSDLKESTLDLTIFPPSISNAFSFQGKYLSLSTFNVR 307
            + SLS+    + +P    T S+  SD   S+  L++FP S S    F     SLS F   
Sbjct: 1186 SSSLSVFPTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSDFLTS 1245

Query: 306  KYDPYFQPSPHNVSSSFSTA 247
                   P+  ++ S F T+
Sbjct: 1246 SSSLSVFPTSSSLPSDFLTS 1265


>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 544  W*LRHVCYTWFQWFGYFRGG*TVRQL*F 627
            W  RHV   W+ WF +F G    RQ+ F
Sbjct: 1593 WFFRHVQCDWYDWFAHFDGQWVARQMEF 1620


>SB_15748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 578 NGLATLGGVRQYDSYNLQVCKHDAAAILERCYNLVPSLK 694
           N +  +GG  Q D+YN      D   I+E     VPSLK
Sbjct: 3   NDVVVIGGTDQLDNYNTSPTLKDTVNIIEGVSKFVPSLK 41


>SB_45174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +2

Query: 314 LKVESDKYLPWNEKAFEIDGGKIVKSKVDSLRSLSKFDLVFNCTGMGA 457
           LK+    Y P  E   +I  GK VKSKV + +S S F +   C   GA
Sbjct: 313 LKIYYCYYEPGQESEDDIGTGKDVKSKVPTGKSSSGFAVAIGCGVAGA 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,264,788
Number of Sequences: 59808
Number of extensions: 666508
Number of successful extensions: 1334
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5094195218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)