Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G03_e23_13.seq
         (1560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   9.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   9.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 293 YGSYFLTLKVESDKYLPW 346
           +  YFL L VE+++  PW
Sbjct: 408 FEEYFLNLTVENNRRNPW 425


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 531 LIQGALIRITCPRIG--TKSLSLHRYFAPIPVQLKTK 427
           ++ G  +R+TCP  G   +S+   R    +P+  K K
Sbjct: 502 IVAGETLRVTCPVAGYPIESIVWERDTRVLPINRKQK 538


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 256 FNRSIYRYNIFNQMISSHVVI 194
           +N   +RY I  ++ S H+V+
Sbjct: 242 YNTKFFRYRITPELYSEHLVV 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 333,800
Number of Sequences: 438
Number of extensions: 7339
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)