Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_G01_e7_13.seq
(1556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 87 5e-18
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 59 1e-09
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 44 4e-05
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 43 1e-04
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 42 2e-04
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 42 2e-04
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 41 4e-04
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 41 5e-04
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 40 0.001
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 39 0.002
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 38 0.005
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 38 0.005
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 0.007
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 36 0.011
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 36 0.015
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 35 0.026
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.046
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.11
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.25
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 29 1.7
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 29 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 2.3
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 3.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 9.3
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com... 27 9.3
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 87.4 bits (207), Expect = 5e-18
Identities = 35/91 (38%), Positives = 60/91 (65%)
Frame = +2
Query: 368 TIMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDXYRKEIEVDNSPCVXEILDT 547
T +RE+ ALT+Q + F+++YDPTIED YRK+ E+D + ++LDT
Sbjct: 4 TYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDT 63
Query: 548 AGTEQFASMRDLYIKNGQGFVVXYSLTKPSN 640
AG E++++MR+ Y++ G+GF++ Y++T S+
Sbjct: 64 AGQEEYSAMREQYMRTGEGFLLVYNITSRSS 94
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/85 (32%), Positives = 49/85 (57%)
Frame = +2
Query: 425 ALTVQFVSGCFMEKYDPTIEDXYRKEIEVDNSPCVXEILDTAGTEQFASMRDLYIKNGQG 604
+LTVQ+V F+E Y PTIE+ + K I+ EI+DTAG ++++ + + G
Sbjct: 21 SLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYSILNSKHSIGIHG 80
Query: 605 FVVXYSLTKPSNAPRYKNL*KELIN 679
+V+ YS+T S+ K + +++N
Sbjct: 81 YVLVYSITSKSSFEMVKIVRDKILN 105
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 44.4 bits (100), Expect = 4e-05
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +2
Query: 428 LTVQFVSGCFMEKYDPTIEDXYRKEIEVDNSPCVXEILDTAGTEQFASMRDLYIKNGQGF 607
L + + + F Y PT+ D Y + + + P + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 608 VVXYSLTKPSNAPRYK 655
+V +S+T P++ K
Sbjct: 79 LVCFSVTSPASFENVK 94
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 428 LTVQFVSGCFMEKYDPTIEDXYRKEIEVDNSPCVXEILDTAGTEQFASMRDLYIKNGQGF 607
L + F G F E Y PT+ + Y ++EVD + DTAG E + +R L +
Sbjct: 22 LLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVV 81
Query: 608 VVXYSLTKPSN 640
++ +S+ P +
Sbjct: 82 LICFSVDAPES 92
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +2
Query: 428 LTVQFVSGCFMEKYDPTIEDXYRKEIEVDNSPCVXEILDTAGTEQFASMRDLYIKNGQGF 607
L + F G F E Y PT+ + Y ++EVD + DTAG E + +R L +
Sbjct: 22 LLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVI 81
Query: 608 VVXYSLTKPSN 640
++ +++ P +
Sbjct: 82 LICFAVDSPDS 92
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = +2
Query: 437 QFVSGCFMEKYDPTI-EDXYRKEIEVDNSPCVXEILDTAGTEQFASMRDLYIKNGQGFVV 613
QFV+ F +Y TI D K++ VD+ ++ DTAG E+F S+ + + V+
Sbjct: 27 QFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVI 86
Query: 614 XYSLTKPSNAPRYKNL*KELINPXKRFRAACPSX*VG 724
Y++ + +N +E + + A P VG
Sbjct: 87 VYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVG 123
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 428 LTVQFVSGCFMEKYDPTIEDXYRKEIEVDNSPCVXEIL--DTAGTEQFASMRDLYIKNGQ 601
L + F SG F E+Y PT+ + Y +I + V E+ DTAG E++ +R L N
Sbjct: 30 LLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSN 89
Query: 602 GFVVXYSLTKPSN 640
++ +S+ P++
Sbjct: 90 VILLCFSIDCPAS 102
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 40.7 bits (91), Expect = 5e-04
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +3
Query: 1095 PAXXXPPXPXXXLSP---XPPXPXLPPPXPXXXXPPXPXPXPXPXPXS 1229
P+ PP P L P PP P +PPP P PP P P P P S
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSP-ASAPPIPSKAP-PIPSS 170
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Frame = +3
Query: 1068 PLXXKXHIXPAXXXPPXPXXXL-SPX--PPXPXLPPPXPXXXXPPXPXPXPXPXPXS 1229
P + + P PP P SP PP P PP P PP P P S
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS 186
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 440 FVSGCFMEKYDPTIEDXYRKEIEVDNSPCVXEILDTAGTEQFASMRDL 583
F G F + Y+PTI + Y +I VD + + DTAG E++ +R L
Sbjct: 33 FTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSL 80
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 428 LTVQFVSGCFMEKYDPTIEDXYR-KEIEVDNSPCVXEILDTAGTEQFASMRDLYIKNGQG 604
L ++F + E Y TI ++ + E++ +I DTAG E+F ++ Y + G
Sbjct: 24 LLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHG 83
Query: 605 FVVXYSLTKPSNAPRYKNL*KEL 673
++ Y +T + K +E+
Sbjct: 84 IIIVYDVTDQDSFNNVKQWLQEI 106
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 497 KEIEVDNSPCVXEILDTAGTEQFASMRDLYIKNGQGFVVXYSLTKPSNAPRYKNL*KEL 673
+ I +DN +I DTAG E++ ++ Y + G ++ Y +TK S+ KEL
Sbjct: 50 RNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKEL 108
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +2
Query: 440 FVSGCFMEKYDPTIEDXYRKEIEVDNSPCVXEILDTAGTEQFASMRDLYIKNGQGFVVXY 619
F G F +Y PT+ + Y + VD + DTAG E++ +R + +V +
Sbjct: 28 FTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGF 87
Query: 620 SLTKPSN 640
++ P +
Sbjct: 88 AIDSPDS 94
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/77 (27%), Positives = 23/77 (29%)
Frame = +3
Query: 999 PTXXXPRXPXRRTPXGXXXXXXXPLXXKXHIXPAXXXPPXPXXXLSPXPPXPXLPPPXPX 1178
P P P R P P P+ PP P +P P P PP P
Sbjct: 999 PVSTSPAAPLARVPPVPKLSSKAPPVP----LPSADAPPIPVPSTAPPVPIPTSTPPVPK 1054
Query: 1179 XXXPPXPXPXPXPXPXS 1229
P P P P S
Sbjct: 1055 SSSGAPSAPPPVPAPSS 1071
Score = 34.7 bits (76), Expect = 0.035
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Frame = +3
Query: 1095 PAXXXP-PXPXXXLSPXPPXPXLPP-PXPXXXXPPXPXPX----PXPXPXS 1229
P+ P P P + P PP PP P P PP P P P P P S
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSS 1244
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Frame = +3
Query: 1113 PXPXXXLSPXPPXPXLPP-PXPXXXXPPXPXPX---PXPXPXSXHXXXXEXTAXSP 1268
P P + P PP PP P P PP P P P P P + TA +P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
Score = 33.1 bits (72), Expect = 0.11
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Frame = +3
Query: 1095 PAXXXPPXPXXXLSPXPPXPX--LPPPXPXXXXPPXPXPX----PXPXPXS 1229
PA PP P +P P P +PP P PP P P P P P +
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTA 1234
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Frame = +3
Query: 1095 PAXXXPPXPXXXLSPXPPXPXL---PPPXPXXXXPPXPXPXPXPXP 1223
P+ PP P +P P P + P P P PP P P P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Score = 31.1 bits (67), Expect = 0.43
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Frame = +3
Query: 1095 PAXXXPPXPXXXLSPXPPXPXL-PPPXPX-XXXPPXPXPX----PXPXPXS 1229
P+ PP P +P P P + PP P PP P P P P P S
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Score = 30.7 bits (66), Expect = 0.57
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = +3
Query: 1095 PAXXXPPXPXXXLSPXP-PXPX-LPP-PXPXXXXPPXPXPXPXP 1217
P+ PP P ++ P P P PP P P PP P P P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Score = 30.3 bits (65), Expect = 0.75
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Frame = +3
Query: 1095 PAXXXP-PXPXXXLSPXP-PXPXLPP-PXPXXXXPPXPXPXPXP 1217
P+ P P P P P P +PP P P PP P P P
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Frame = +3
Query: 1095 PAXXXPPXPXXXLSPXPPXPXL-PPPXPX-XXXPPXPXPX----PXPXPXSXHXXXXEXT 1256
P+ PP P +P P P + PP P PP P P P P P
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV 1166
Query: 1257 AXSP 1268
A P
Sbjct: 1167 AAPP 1170
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Frame = +3
Query: 1110 PPXPXXXLSPXPPXPXL---PPPXPXXXXPPXPXPXPXP 1217
PP P P P P + P P P PP P P P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP 1121
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/77 (25%), Positives = 21/77 (27%), Gaps = 2/77 (2%)
Frame = +3
Query: 999 PTXXXPRXPXRRTPXGXXXXXXXPLXXKXHIXPAXXXPPXPXXXLS-PXPPXPXLPPPXP 1175
P+ P P T P K PP P P P P PP P
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086
Query: 1176 X-XXXPPXPXPXPXPXP 1223
PP P P P
Sbjct: 1087 APSGIPPVPKPSVAAPP 1103
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Frame = +3
Query: 1095 PAXXXPPXPXXXLSPXPPXPXLPP--PXPXXXXPPXPXPX----PXPXPXSXHXXXXEXT 1256
P+ P P +P P P P P P PP P P P P P
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSV 1128
Query: 1257 AXSP 1268
A P
Sbjct: 1129 AAPP 1132
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 36.3 bits (80), Expect = 0.011
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 428 LTVQFVSGCFMEKYDPTIEDXYR-KEIEVDNSPCVXEILDTAGTEQFASMRDLYIKNGQG 604
L ++F F + TI ++ + IE+D +I DTAG E+F ++ Y + G
Sbjct: 25 LLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 84
Query: 605 FVVXYSLT 628
++ Y +T
Sbjct: 85 ILLLYDVT 92
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 35.9 bits (79), Expect = 0.015
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 437 QFVSGCFMEKYDPTI-EDXYRKEIEVDNSPCVXEILDTAGTEQFASMRDLYIKNGQGFVV 613
Q+V+ F + Y TI D KE+ VD+ ++ DTAG E+F S+ + + V+
Sbjct: 27 QYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVL 86
Query: 614 XYSL 625
Y +
Sbjct: 87 VYDV 90
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 35.1 bits (77), Expect = 0.026
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 374 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DXYRKEIEVDNSPCVXEILDTA 550
+R+F +L +F+ F Y TI D K + +++ ++ DTA
Sbjct: 9 LRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 68
Query: 551 GTEQFASMRDLYIKNGQGFVVXYSLT 628
G E+F S+ YI++ ++ Y +T
Sbjct: 69 GQERFRSLIPSYIRDSSVAIIVYDIT 94
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.046
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 1110 PPXPXXXLSPXP-PXPX-LPPPXPXXXXPPXPXPXP 1211
PP P + P P P P +PPP P PP P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +3
Query: 1095 PAXXXPPXPXXXLSPXPPXPXLPPPXPXXXXPPXPXPXP 1211
PA P P + PP P PPP PP P P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPP--PPPGVAGAGPPPPPPPP 782
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 1161 PPPXPXXXXPPXPXPXPXPXP 1223
PPP P P P P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP 752
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 1134 SPXPPXPXLPPPXPXXXXPPXPXPXPXPXP 1223
SP PP P + P P P P P P P P
Sbjct: 731 SPPPPPPAVIVPTPA----PAPIPVPPPAP 756
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Frame = +3
Query: 1095 PAXXXP-PXPXXXLSPXPPXPXL----PPPXPXXXXPPXPXPXPXPXP 1223
PA P P P P PP P + PPP P P P P P P
Sbjct: 737 PAVIVPTPAPAPIPVP-PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 1225 SGXGXGXGXGXGGXXXXGKGGGSXGXGGXGESXXNGXGG 1109
+G G G G GG G+GG G GG G G GG
Sbjct: 22 NGGRGGFGGGRGGARGGGRGGARGGRGGRG-GARGGRGG 59
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Frame = -2
Query: 1222 GXGXGXGXGXGGXXXX--GKGGGSXGXGGXGESXXNGXGG 1109
G G G G GG G+GG G GG GG
Sbjct: 31 GRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.25
Identities = 20/75 (26%), Positives = 20/75 (26%)
Frame = +3
Query: 981 GXXGXHPTXXXPRXPXRRTPXGXXXXXXXPLXXKXHIXPAXXXPPXPXXXLSPXPPXPXL 1160
G HP P P P P P PP P P P
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPP--------PPMSVPPPPSAPPMPAGPPSAP 1731
Query: 1161 PPPXPXXXXPPXPXP 1205
PPP P P P P
Sbjct: 1732 PPPLPASSAPSVPNP 1746
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Frame = +3
Query: 1089 IXPAXXXPPXPXXXLSPXPPXPXLPPPX--PXXXXPPXPXPXPXP 1217
+ P PP P PP PPP P PP P P P
Sbjct: 1692 VRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/45 (28%), Positives = 14/45 (31%)
Frame = +3
Query: 1095 PAXXXPPXPXXXLSPXPPXPXLPPPXPXXXXPPXPXPXPXPXPXS 1229
P P P P P PPP PP P P P +
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSA 1730
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = +3
Query: 1110 PPXPXXXLSPXPPXPXLPPPXPXXXXPPXPXPXPXPXP 1223
PP P + P P P +P P PP P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = +3
Query: 1089 IXPAXXXPPXPXXXLSPXPPXPXLP-PPXPXXXXPPXPXPXPXP 1217
+ PA P S PP P PP P PP P P P
Sbjct: 1681 MAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 443 VSGCFMEKYDPTIE-DXYRKEIEVDNSPCVXEILDTAGTEQFASMRDLYIKNGQGFVVXY 619
++G F +KY T+ + + + + DTAG E+ +RD Y GQ ++ +
Sbjct: 30 LTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMF 89
Query: 620 SLT 628
+T
Sbjct: 90 DVT 92
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 533 EILDTAGTEQFASMRDLYIKNGQGFVVXYSLT 628
+I DTAG E+F S+ Y + G V+ Y +T
Sbjct: 65 QIWDTAGQEKFRSVARNYYRGAAGAVLVYDVT 96
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +3
Query: 1098 AXXXPPXPXXXLSPXPPXPX-LPPPXPXXXXPPXPXPXPXPXPXS 1229
A PP P PP P +P P P P P P P P +
Sbjct: 443 APAAPPLPPSA-PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486
Score = 27.1 bits (57), Expect = 7.0
Identities = 28/137 (20%), Positives = 34/137 (24%)
Frame = +3
Query: 1110 PPXPXXXLSPXPPXPXLPPPXPXXXXPPXPXPXPXPXPXSXHXXXXEXTAXSPXXXXXXT 1289
PP LS P P PP PP P P P S + +
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPI-APVSMNPAINSTSKPPLPPPSSRV 299
Query: 1290 SXXXX*XXTXXXPXPXXXXXXXXXXPXLXHXSXSXXLPPLXXPSXXPXPKTXXXPXLXXX 1469
S P P P + + S + LPP P + P
Sbjct: 300 SAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRS 359
Query: 1470 XXXPPIXNPPPXHHXXP 1520
PP P P
Sbjct: 360 APPPPPPRSAPSTGRQP 376
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +3
Query: 1137 PXPPXPXLPPPXPXXXXPPXPXPXPXPXPXS 1229
P P P LPP P P P P P +
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAA 446
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 1095 PAXXXPPXPXXXLSPXPPXPXLPPPXPXXXXPPXPXPXPXPXP 1223
P P P P P LPP P PP P P P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAP--IAPPLPAGMPAAPP 468
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +3
Query: 1134 SPXPPXPXLPPPXPXXXXPPXPXPXPXPXPXS 1229
SP P +P P P P P P P P S
Sbjct: 584 SPSVIPPRVPTPVPGRTLSPKPTRIPTPIPSS 615
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 1131 LSPXPPXPXLPPPXPXXXXPPXPXPXPXP 1217
++ PP PPP P PP P P P
Sbjct: 1 MASLPPGNPPPPPPPPGFEPPSQPPPPPP 29
>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
complex anchor subunit Tim18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 465 FSMKHPDTNCTVKALFPTPPDPSTTTLNSRIIVSYKSHLR-NFHTTF*KRILSV 307
F++K T K +FP PP T+N + + S L ++H F +RI+++
Sbjct: 45 FAVKSFSTTSVAK-IFPPPPQTIKGTVNDAAVFPHHSKLHGSYHWDF-ERIIAI 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,008,559
Number of Sequences: 5004
Number of extensions: 71389
Number of successful extensions: 319
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 876120908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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