Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_F12_e94_12.seq
(1544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428... 70 6e-12
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 35 0.20
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 35 0.20
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 33 0.61
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.80
07_03_1136 + 24218601-24218734,24218769-24219906 32 1.1
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 32 1.1
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.8
01_01_0715 - 5542648-5543219,5543352-5543544 31 1.8
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 31 3.2
04_04_0837 + 28547815-28547970,28548073-28548783 30 4.3
01_03_0005 + 11568545-11569119,11569179-11569191 30 4.3
09_04_0347 + 16887182-16888504 30 5.6
07_01_0975 + 8223269-8224354 29 7.5
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982 29 7.5
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 7.5
04_04_0588 - 26412487-26413887 29 9.9
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 29 9.9
>01_06_1797 +
39941482-39941608,39942302-39942497,39942601-39942828,
39943157-39943388,39943476-39943583,39943696-39943968,
39944261-39944545
Length = 482
Score = 69.7 bits (163), Expect = 6e-12
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = -2
Query: 784 GGWIVKLDVDIGNGGMKLDPDXLVTSGAEPDGPAXPHEMRXPGGDCSXDIWL 629
G ++++DVD GG+ ++P+ V GAEP+GP+ HEMR PGGDC+ DIW+
Sbjct: 431 GSHMLQIDVDTEKGGLSINPNFFVDFGAEPEGPSLAHEMRYPGGDCTSDIWI 482
>04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 34.7 bits (76), Expect = 0.20
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Frame = +2
Query: 1184 PRETXXXLARPPTRGXWGXEXRPG-GP----PXPXXPPWGPXN*PAXAGXPXXXXGXRPP 1348
P + A PP++G +G P GP P P P+ P+ RPP
Sbjct: 119 PSQGPFGTAPPPSQGPFGTAPPPSQGPFGTAPPPSQGPFAASVPPSQGPFASAQPPFRPP 178
Query: 1349 GXXWGGPTXXGXXPXAXXXEPPP 1417
PT G P + PPP
Sbjct: 179 PSLVQSPTASGMAPPSAYVRPPP 201
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 34.7 bits (76), Expect = 0.20
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 3/86 (3%)
Frame = +2
Query: 1235 GXEXRPGGPPXPXXPPWGPXN*PAXAGXPXXXXGXRPPGXXWGG---PTXXGXXPXAXXX 1405
G P PP P P P N A P PP GG P G P
Sbjct: 1153 GSSPPPASPP-PSTPSAPPTNSSGSAPSPPSPSQSAPPANTGGGGSPPPSHGSPPAPKAV 1211
Query: 1406 EPPPLXPXXXGXGGXXXAXXGXPPGG 1483
+ P P G GG GG
Sbjct: 1212 QSQP-APKRSGDGGSSSDSGSSKEGG 1236
Score = 30.7 bits (66), Expect = 3.2
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = -3
Query: 1491 QXXPPGGXPXXAXXXPPXPXXXGXXGGGSXXXAXGXXPXXVGPPXXXPGGRXPXXXXGXP 1312
Q PPG P A P P GS P PP GG P G P
Sbjct: 1148 QSPPPGSSPPPASPPPSTPSAPPTNSSGSAPSPPS--PSQSAPPANTGGGGSPPPSHGSP 1205
>03_03_0118 + 14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 33.1 bits (72), Expect = 0.61
Identities = 35/132 (26%), Positives = 37/132 (28%), Gaps = 2/132 (1%)
Frame = +2
Query: 1145 SGXRXLTGSXFLNPRETXXXLARPPTRGXWGXEXRPGG--PPXPXXPPWGPXN*PAXAGX 1318
SG TGS T A PPT P G PP PP P AG
Sbjct: 345 SGSCVFTGSSMAGGSNTSVPGASPPT-----TLSPPAGLTPPVGTSPPTDFS--PPAAGT 397
Query: 1319 PXXXXGXRPPGXXWGGPTXXGXXPXAXXXEPPPLXPXXXGXGGXXXAXXGXPPGGXXWGX 1498
G PP +G P G PP G A G G
Sbjct: 398 TPPAGGFTPPAGGFGTPPLGGFGTPPSGFGPPGSFNGSGSSFGPSSAFSPYGGAGHRDGG 457
Query: 1499 XXGPRRRXAXVA 1534
G R A +A
Sbjct: 458 ASGARLAAAALA 469
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.7 bits (71), Expect = 0.80
Identities = 33/111 (29%), Positives = 34/111 (30%), Gaps = 1/111 (0%)
Frame = -3
Query: 1509 GPXXXPQXXPPGGXPXX-AXXXPPXPXXXGXXGGGSXXXAXGXXPXXVGPPXXXPGGRXP 1333
G P P GG A PP P G G P PP GG P
Sbjct: 1117 GITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPP-PPAGFRGGTPP 1175
Query: 1332 XXXXGXPAXAG*FXGPHGGXXGXGGPPGRXSXPQXPRVGGRASXXXVSRGL 1180
G A HGG G PPG + P P V G RGL
Sbjct: 1176 PNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGL 1226
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 32.3 bits (70), Expect = 1.1
Identities = 26/89 (29%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Frame = -3
Query: 1509 GPXXXPQXXPPGGXPXXAXXXPPXPXXXGXXGGGSXXXAXGXXPXXVG-PPXXXPGGRXP 1333
G P PPG PP P G G G + PP GG
Sbjct: 112 GGGGGPPSLPPGAG-GGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALG 170
Query: 1332 XXXXGXPAXAG*FXGPHGGXXGXGGPPGR 1246
G G P GG G GG PGR
Sbjct: 171 RPPGGGGGGGGPGRAPGGG--GGGGGPGR 197
Score = 29.1 bits (62), Expect = 9.9
Identities = 25/88 (28%), Positives = 26/88 (29%)
Frame = -3
Query: 1509 GPXXXPQXXPPGGXPXXAXXXPPXPXXXGXXGGGSXXXAXGXXPXXVGPPXXXPGGRXPX 1330
G P+ GG A PP G G G G P PGG
Sbjct: 139 GGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGG------GGPGRAPGGGGGG 192
Query: 1329 XXXGXPAXAG*FXGPHGGXXGXGGPPGR 1246
G G G GG G GG P R
Sbjct: 193 GGPGRAPGGGGGGGGLGGGGGEGGAPER 220
Score = 29.1 bits (62), Expect = 9.9
Identities = 23/76 (30%), Positives = 23/76 (30%)
Frame = -3
Query: 1476 GGXPXXAXXXPPXPXXXGXXGGGSXXXAXGXXPXXVGPPXXXPGGRXPXXXXGXPAXAG* 1297
GG PP P G GGG G P GG P AG
Sbjct: 336 GGGGGAGGVFPPTPDLGGGGGGG----GGGTKVRVCAPKDISGGGGGGGGMLDKPDEAG- 390
Query: 1296 FXGPHGGXXGXGGPPG 1249
G GG G GG G
Sbjct: 391 -GGGGGGSGGGGGGGG 405
>02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 32.3 bits (70), Expect = 1.1
Identities = 25/83 (30%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Frame = +2
Query: 1235 GXEXRPGGPPXPXXPPWGPXN*PAXAGXPXXXXGXRPPGXXWGGPTXXGXXPX--AXXXE 1408
G PG P P P G P P PPG G G P A
Sbjct: 103 GAPLMPGVRP-PILPAPGIPGYPGAPNVPTMPQTGAPPGSMPPGSMPPGSMPMQMAPLPR 161
Query: 1409 PPPLXPXXXGXGGXXXAXXGXPP 1477
PP L P G G G PP
Sbjct: 162 PPTLPPPTSGAPGAPIPNSGAPP 184
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.5 bits (68), Expect = 1.8
Identities = 21/66 (31%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Frame = +2
Query: 1250 PGGPPXPXXPPWGPXN*PAXAGX-------PXXXXGXRPPGXXWGGPTXXGXXPXAXXXE 1408
P P P PP P A AG P RPPG G P G
Sbjct: 325 PAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGP 384
Query: 1409 PPPLXP 1426
PPP P
Sbjct: 385 PPPALP 390
Score = 30.7 bits (66), Expect = 3.2
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = +2
Query: 1250 PGGPPXPXXPPWGPXN*PAXAGXPXXXXGXRPPGXXWGGPTXXGXXPXA--XXXEPPPLX 1423
P GPP P PP P + P PPG G T P A PPP
Sbjct: 279 PAGPPPPAPPPLPPSHHHHHGHHPPPPHPL-PPGAGAGAGTGAPPPPPAHPAAPAPPPPA 337
Query: 1424 PXXXGXGGXXXAXXGXPP 1477
P G A G PP
Sbjct: 338 PSPSAAG----AGSGPPP 351
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 31.5 bits (68), Expect = 1.8
Identities = 26/95 (27%), Positives = 26/95 (27%), Gaps = 2/95 (2%)
Frame = -3
Query: 1494 PQXXPPGGXPXXAXXXP-PXPXXXGXXGGGSXXXAXGXXPXXVG-PPXXXPGGRXPXXXX 1321
P PP P P P P G G P G PP P
Sbjct: 143 PSPPPPPTVPAAPTPRPSPPPPAAGTNGTARAPSPPVPAPAPAGSPPPPPPPPAGGNFTA 202
Query: 1320 GXPAXAG*FXGPHGGXXGXGGPPGRXSXPQXPRVG 1216
PA F P G G PP R S R G
Sbjct: 203 PSPAGGMNFTAPAPGTNGTAAPPPRPSSAPSVRGG 237
>11_06_0300 + 22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 30.7 bits (66), Expect = 3.2
Identities = 29/109 (26%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
Frame = -3
Query: 1506 PXXXPQXXPPGGXPXXAXXXPPXPXXXGXX-GGGSXXXAXGXXPXXVGPPXXXPGGRXPX 1330
P P P P + PP G GGG+ PP PG P
Sbjct: 19 PAPAPAANGPA-RPDRSSYVPPHLRNRGASSGGGAAAPPPSSSSSSAPPPRAAPGLLAP- 76
Query: 1329 XXXGXPAXAG*FXGPHGGXXGXGGPPGRXSXPQXPRVGGRASXXXVSRG 1183
PA AG G GG G GG G + P G G
Sbjct: 77 ----RPAAAG--MGRMGGGGGGGGFGGPRRWDREPNPFGNDGDAAAGAG 119
>04_04_0837 + 28547815-28547970,28548073-28548783
Length = 288
Score = 30.3 bits (65), Expect = 4.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 1314 GTPXGXPXXAPPXXXGGDPQXXXXPP 1391
G P P +PP GG+P PP
Sbjct: 98 GIPTAIPISSPPTSSGGEPAVSSSPP 123
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 30.3 bits (65), Expect = 4.3
Identities = 27/96 (28%), Positives = 27/96 (28%), Gaps = 2/96 (2%)
Frame = -3
Query: 1506 PXXXPQXXPPGGXPXXAXXXPPXPXXXGXXGGGSXXXAXGXXPXXVGPPXXXPGGRXPXX 1327
P P PP P PP G GGG P PP GG
Sbjct: 52 PSYYPPPPPPVVTPTPQCPPPPSYPSGGGGGGGGGTVMYTSPP----PPYSGGGGGSSTG 107
Query: 1326 XXG--XPAXAG*FXGPHGGXXGXGGPPGRXSXPQXP 1225
G P G G GG GG G P P
Sbjct: 108 GGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPP 143
>09_04_0347 + 16887182-16888504
Length = 440
Score = 29.9 bits (64), Expect = 5.6
Identities = 16/61 (26%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Frame = -3
Query: 1539 ERATXAXRRRGPXXXPQXXPPGGXPX-XAXXXPPXPXXXGXXGGGSXXXAXGXXPXXVGP 1363
E + A R G P PP P + PP GS A P G
Sbjct: 31 EASAEAARGHGSSPSPSKTPPPANPNPKSAAAPPSAVAAPASAAGSDSGAASDSPRAAGN 90
Query: 1362 P 1360
P
Sbjct: 91 P 91
>07_01_0975 + 8223269-8224354
Length = 361
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/84 (26%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Frame = -3
Query: 1473 GXPXXAXXXPPXPXXXGXXGG--GSXXXAXGXXPXXV--GPPXXXPGGRXPXXXXGXPAX 1306
G A P P GG GS + P G P P G G PA
Sbjct: 219 GSGSAASAPGPSPSDDTGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAG 278
Query: 1305 AG*FXGPHGGXXGXGGPPGRXSXP 1234
GP G G G P
Sbjct: 279 GPTAGGPASGPSSYGAASGPAEGP 302
>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
Length = 301
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/72 (26%), Positives = 20/72 (27%)
Frame = +3
Query: 1281 HGGXXINRXXPGTPXGXPXXAPPXXXGGDPQXXXXPPPPXRXSRPXSXXXXRXAAGRXPP 1460
HGG PG G GG P P P + P G PP
Sbjct: 66 HGGTTTPTPIPGHHGGGGSSGTTPSHGGGPSGGALPSPSHGGAAPSHG----GGYGASPP 121
Query: 1461 XVGXPQXGXXGG 1496
P G GG
Sbjct: 122 VTPSPGGGYGGG 133
>01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.5 bits (63), Expect = 7.5
Identities = 25/87 (28%), Positives = 27/87 (31%)
Frame = -3
Query: 1479 PGGXPXXAXXXPPXPXXXGXXGGGSXXXAXGXXPXXVGPPXXXPGGRXPXXXXGXPAXAG 1300
PG P PP P G GG G P PGG P G P
Sbjct: 347 PGSYPPSYGAPPPNPPYSGGAPGGQGSLPPSYDGGYGGRP--MPGGGGP----GAPPPYH 400
Query: 1299 *FXGPHGGXXGXGGPPGRXSXPQXPRV 1219
G GG G GG G + +V
Sbjct: 401 GGGGGGGGGGGGGGYTGSAAPEPAAKV 427
>04_04_0588 - 26412487-26413887
Length = 466
Score = 29.1 bits (62), Expect = 9.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 648 QSPPGXLISCGNAGPSGSAPEVTRXSGSNFMPPFPISTSNFTIHPPXSXH 797
+SP L S + S SAP R S ++ P IS+S + PP + H
Sbjct: 54 RSPDRLLRSASSLSTSSSAPPSPRSSSASDAPVRVISSSPSSPSPPSARH 103
>03_06_0565 + 34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 29.1 bits (62), Expect = 9.9
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +2
Query: 1145 SGXRXLTGSXFLNPRETXXXLARPPTRGXWGXEXRPGGPPXPXXPPWG 1288
S G FL + + + G G E PG P P PPWG
Sbjct: 378 SAAASADGGAFLEFVDYAISMLSSSSSGGNGDES-PGAGPAPARPPWG 424
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,665,463
Number of Sequences: 37544
Number of extensions: 637193
Number of successful extensions: 1885
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4977304332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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