Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_F12_e94_12.seq
(1544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33343| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 3e-07
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.20
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.27
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 31 2.5
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 30 4.3
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 7.5
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 7.5
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 10.0
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 10.0
SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05) 29 10.0
>SB_33343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 54.0 bits (124), Expect = 3e-07
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = -2
Query: 784 GGWIVKLDVDIGNGGMKLDPDXLVTSGAEPDGPAXPHEMRXPGG 653
G ++ +DVD NGGM L+ D LV G EPDGP HE+R PGG
Sbjct: 180 GAMLLVVDVDHVNGGMMLNKDFLVDFGEEPDGPTLAHEVRYPGG 223
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 34.7 bits (76), Expect = 0.20
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 1247 RPGGPPXPXXPPWGPXN*PAXAGXPXXXXGXRP 1345
RP GPP P PP+GP P G P G P
Sbjct: 407 RPMGPPGPHGPPFGPRGPPPHGGPPRGPMGPGP 439
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 34.3 bits (75), Expect = 0.27
Identities = 29/99 (29%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Frame = +2
Query: 1214 PPTRGXWGXEXRPG-GPPXPXX------PPWGPXN*PAXAGXPXXXXGXRPP--GXXWGG 1366
PP G +G RP GPP PP GP P PP G G
Sbjct: 2124 PPPMGQYGAPARPAMGPPPMGSSRYGPPPPMGPARHSPSGPSPLGAPPSVPPPMGAPPSG 2183
Query: 1367 PTXXGXXPXAXXXEPPPLXPXXXGXGGXXXAXXGXPPGG 1483
P G P PPP+ G G PP G
Sbjct: 2184 PPPMGAPPSG----PPPMGTPPSGHPPMGAPPMGPPPSG 2218
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 31.1 bits (67), Expect = 2.5
Identities = 20/55 (36%), Positives = 21/55 (38%)
Frame = -3
Query: 1413 GGSXXXAXGXXPXXVGPPXXXPGGRXPXXXXGXPAXAG*FXGPHGGXXGXGGPPG 1249
GG A G P G PGG P G P AG + P G G PPG
Sbjct: 20 GGYPPAAPGGYPPAPGGYPPAPGGYPPSGGYGYPP-AGGYPPPQPGYAGGPPPPG 73
Score = 31.1 bits (67), Expect = 2.5
Identities = 27/94 (28%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Frame = -3
Query: 1479 PGGXPXXAXXXPPXPXXXGXXGGGSXXXAXGXXPXXVG------PPXXXP--GGRXPXXX 1324
PGG P PP P GG A G P G PP P GG P
Sbjct: 27 PGGYPPAPGGYPPAPGGYPPSGGYGYPPAGGYPPPQPGYAGGPPPPGIAPGIGGPPPSGQ 86
Query: 1323 XGXPAXAG*FXGPHGGXXGXGGPPGRXSXPQXPR 1222
G P + + P G PG P P+
Sbjct: 87 YGAPPTSQPYGAP-----PTSGYPGYQQHPPPPQ 115
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 30.3 bits (65), Expect = 4.3
Identities = 25/67 (37%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +3
Query: 1281 HGGXXINRXXPGTPX--GXPXXAPPXXXGGDPQXXXXPPPPXRXSRPXSXXXXRXAAGRX 1454
HGG N+ PG P G P PP G P PPP SRP GR
Sbjct: 267 HGGP-FNQAPPGFPPRWGPPPHMPPDYRGFPPPNF---PPPD-FSRPPPNFNDPAFQGRP 321
Query: 1455 PPXVGXP 1475
PP V P
Sbjct: 322 PPFVRPP 328
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 30.3 bits (65), Expect = 4.3
Identities = 28/92 (30%), Positives = 28/92 (30%), Gaps = 2/92 (2%)
Frame = +2
Query: 1214 PPTRGXW-GXEXRPGGPPXPXXPPWGPXN*PAXAGXPXXXXGXRPPGX-XWGGPTXXGXX 1387
PP W G P GPP PP GP G P PPG W G
Sbjct: 1805 PPGAIGWKGNPGNPAGPPGLDGPP-GPPGPQGPKGWPGVPGPPGPPGAYGWKGYPGNPAG 1863
Query: 1388 PXAXXXEPPPLXPXXXGXGGXXXAXXGXPPGG 1483
P P P P G G PGG
Sbjct: 1864 PPGRDGIPGP--PGRQGGKGPAGIPGIPGPGG 1893
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.5 bits (63), Expect = 7.5
Identities = 29/114 (25%), Positives = 31/114 (27%), Gaps = 6/114 (5%)
Frame = -3
Query: 1539 ERATXAXRRRGPXXXPQ----XXPP--GGXPXXAXXXPPXPXXXGXXGGGSXXXAXGXXP 1378
ER RGP P PP P PP P G + P
Sbjct: 110 ERKAAGAGPRGPALKPPGFRTTAPPPKNSSPPPPFGAPPPPDRGGQLAKKPSQGSFPPPP 169
Query: 1377 XXVGPPXXXPGGRXPXXXXGXPAXAG*FXGPHGGXXGXGGPPGRXSXPQXPRVG 1216
PP P G P + G PH PP R S P P G
Sbjct: 170 PMGKPPP--PSGNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSSGPPPPPPG 221
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.5 bits (63), Expect = 7.5
Identities = 29/114 (25%), Positives = 31/114 (27%), Gaps = 6/114 (5%)
Frame = -3
Query: 1539 ERATXAXRRRGPXXXPQ----XXPP--GGXPXXAXXXPPXPXXXGXXGGGSXXXAXGXXP 1378
ER RGP P PP P PP P G + P
Sbjct: 22 ERKAAGAGPRGPALKPPGFRTTAPPPKNSSPPPPFGAPPPPDRGGQLAKKPSQGSFPPPP 81
Query: 1377 XXVGPPXXXPGGRXPXXXXGXPAXAG*FXGPHGGXXGXGGPPGRXSXPQXPRVG 1216
PP P G P + G PH PP R S P P G
Sbjct: 82 PMGKPPP--PSGNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSSGPPPPPPG 133
>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = -3
Query: 1425 GXXGGGSXXXAXGXXPXXVGPPXXXPGGRXPXXXXGXPAXAG*FXGPHGGXXGXGGPPG 1249
G GGG G G G G G G GG G GG PG
Sbjct: 301 GATGGGGGATGVGGGATGGGGGATGGGVGATGGGGGATGGGGGVTGGGGGATGGGGGPG 359
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 10.0
Identities = 27/75 (36%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Frame = +2
Query: 1214 PPTRGXWGXEXRPG--GPPXPXXPPW--GPXN*PAXAGXPXXXXGXRPPGXXWGGPTXXG 1381
PP G G PG GPP P PP GP P G P PPG GP G
Sbjct: 867 PP--GQVGEMGPPGLPGPPGPASPPSPPGPPGPPGPKGPPGPNGCLGPPGD--AGP--AG 920
Query: 1382 XXPXAXXXEPPPLXP 1426
A PP P
Sbjct: 921 NTGGAGCQPAPPCPP 935
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 29.1 bits (62), Expect = 10.0
Identities = 28/97 (28%), Positives = 29/97 (29%), Gaps = 9/97 (9%)
Frame = +2
Query: 1214 PPTRGXWGXEXRPGGPPXPXXPPWGPXN*PAXAGX-----PXXXXGXRPPGXXWGG--PT 1372
PP+RG G PP P P PA G P RPP G P
Sbjct: 290 PPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPP 349
Query: 1373 XXGXX--PXAXXXEPPPLXPXXXGXGGXXXAXXGXPP 1477
G P PPP P G G PP
Sbjct: 350 SMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRPP 386
Score = 29.1 bits (62), Expect = 10.0
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 1311 PGTPXGXPXXAPPXXXGGDPQXXXXPPPP 1397
P P G P PP G P PPPP
Sbjct: 367 PPPPVGGPPPPPPPIEGRPPSSLGNPPPP 395
>SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)
Length = 346
Score = 29.1 bits (62), Expect = 10.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +2
Query: 1214 PPTRGXWGXEXRPGGP-PXPXXPPWGPXN*PAXAGXPXXXXGXRPPG 1351
P ++G G + PG P P PP GP P G P PPG
Sbjct: 59 PGSQGLSGVQGYPGAPGPRGRSPP-GPPGIPGPRGLPGYRGPKGPPG 104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,332,453
Number of Sequences: 59808
Number of extensions: 531907
Number of successful extensions: 1075
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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