Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F12_e94_12.seq
         (1544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14040.1 68417.m02169 selenium-binding protein, putative cont...    77   4e-14
At4g14030.1 68417.m02168 selenium-binding protein, putative cont...    74   2e-13
At3g23800.1 68416.m02991 selenium-binding family protein contain...    71   2e-12
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    38   0.013
At1g15830.1 68414.m01900 expressed protein                             31   2.7  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    30   4.7  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   6.2  

>At4g14040.1 68417.m02169 selenium-binding protein, putative
           contains Pfam profile PF05694: 56kDa selenium binding
           protein (SBP56); similar to Putative selenium-binding
           protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
           similar to selenium binding protein (GI:15485232)
           [Arabidopsis thaliana]
          Length = 487

 Score = 76.6 bits (180), Expect = 4e-14
 Identities = 31/54 (57%), Positives = 38/54 (70%)
 Frame = -2

Query: 790 EXGGWIVKLDVDIGNGGMKLDPDXLVTSGAEPDGPAXPHEMRXPGGDCSXDIWL 629
           E G  I+++DVD   GG+ L+PD  V  G EPDGPA  HEMR PGGDC+ DIW+
Sbjct: 434 EKGSHIIQIDVDTDKGGLTLNPDFFVDFGDEPDGPALAHEMRYPGGDCTSDIWI 487


>At4g14030.1 68417.m02168 selenium-binding protein, putative
           contains Pfam profile PF05694: 56kDa selenium binding
           protein (SBP56); identical to Putative selenium-binding
           protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
           similar to selenium binding protein (GI:15485232)
           [Arabidopsis thaliana]; identical to cDNA from partial
           mRNA for selenium binding protein (sbp gene) GI:15485231
          Length = 490

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = -2

Query: 790 EXGGWIVKLDVDIGNGGMKLDPDXLVTSGAEPDGPAXPHEMRXPGGDCSXDIWL 629
           E G  I+++DVD   GG+ ++PD  V  G EPDGP+  HEMR PGGDC+ DIW+
Sbjct: 437 EKGSHIIQIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490


>At3g23800.1 68416.m02991 selenium-binding family protein contains
           Pfam profile: PF05694 56kDa selenium binding protein
           (SBP56)
          Length = 480

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 27/54 (50%), Positives = 38/54 (70%)
 Frame = -2

Query: 790 EXGGWIVKLDVDIGNGGMKLDPDXLVTSGAEPDGPAXPHEMRXPGGDCSXDIWL 629
           E G  ++++DVD   GG+ ++P+  V  G EPDGP+  HEMR PGGDC+ DIW+
Sbjct: 427 EKGSHMLQIDVDTDKGGLSINPNFFVDFGTEPDGPSLAHEMRYPGGDCTSDIWV 480


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
            profile PF00917: MATH domain
          Length = 420

 Score = 38.3 bits (85), Expect = 0.013
 Identities = 27/73 (36%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = -3

Query: 1425 GXXGGGSXXXAXGXXPXXVGPPXXXPGGRXPXXXXGXPAXAG*FXGPHGGX-XGXGGP-P 1252
            G  G G      G      GP     GGR P      P   G + GP G    G GGP P
Sbjct: 29   GGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPRGPGFGPRGPGPWSGPRGPRPGGGGGPGP 88

Query: 1251 GRXSXPQXPRVGG 1213
            G  S P+ PR GG
Sbjct: 89   GPWSGPRGPRPGG 101



 Score = 32.3 bits (70), Expect = 0.88
 Identities = 29/92 (31%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
 Frame = -3

Query: 1518 RRRGPXXXPQXXPPGGXPXXAXXXPPXPXXXGXXGGGSXXXAXGXXPXXVGPPXXXP--G 1345
            R  GP   P    PG  P      P  P   G   GG      G      GP    P  G
Sbjct: 20   RGGGPGFGPGG--PGFGPGGPGFGPGGP---GFGPGGPGFGGRGPRGPGFGPRGPGPWSG 74

Query: 1344 GRXPXXXXGXPAXAG*FXGPHGGXXGXGGPPG 1249
             R P    G     G + GP G   G GG PG
Sbjct: 75   PRGPRPGGGGGPGPGPWSGPRGPRPGGGGGPG 106



 Score = 29.5 bits (63), Expect = 6.2
 Identities = 28/92 (30%), Positives = 29/92 (31%)
 Frame = +2

Query: 1217 PTRGXWGXEXRPGGPPXPXXPPWGPXN*PAXAGXPXXXXGXRPPGXXWGGPTXXGXXPXA 1396
            P  G  G    PGGP      P GP   P   G      G RP G   GGP   G  P +
Sbjct: 38   PGFGPGGPGFGPGGPGFGGRGPRGPGFGPRGPGPWSGPRGPRPGGG--GGP---GPGPWS 92

Query: 1397 XXXEPPPLXPXXXGXGGXXXAXXGXPPGGXXW 1492
                P P      G G       G    G  W
Sbjct: 93   GPRGPRPGGGGGPGSGCGSGTGGGNQGQGGMW 124


>At1g15830.1 68414.m01900 expressed protein
          Length = 483

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 33/100 (33%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
 Frame = +2

Query: 1190 ETXXXLARPPTRGXWGXEXRPGGPPXPXXPPWGPXN*PAXAGXPXXXXGXRPPGXXWGG- 1366
            ET    A PP RG  G    PG PP    P  G    P   G P       PP    GG 
Sbjct: 116  ETVIPGAPPPIRGGGGEPAIPGAPP----PKRGGGGEPVIPGAP-------PPKRGGGGE 164

Query: 1367 PTXXGXXP--XAXXXEPP-PLXPXXXGXGGXXXAXXGXPP 1477
            P   G  P       EP  P  P     GG      G PP
Sbjct: 165  PVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPP 204


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
            contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
            PF04815: Sec23/Sec24 helical domain and PF04810:
            Sec23/Sec24 zinc finger
          Length = 1096

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
 Frame = +3

Query: 1254 GGPLXXXXRHGGXXINRXXPGTPXGXPXXAPPXXXGGD--PQXXXXPPPPXRXSRPXSXX 1427
            G P           INR  P  P   P  +PP        PQ     P P   +RP    
Sbjct: 31   GNPNSLAANMQNLNINRPPPPMPGSGPRPSPPFGQSPQSFPQQQQQQPRPSPMARPGPPP 90

Query: 1428 XXRXAAGRXPPXVGXP 1475
                A    PP V  P
Sbjct: 91   PAAMARPGGPPQVSQP 106


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 25/80 (31%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
 Frame = +2

Query: 1250 PGG-PPXPXXPPWGPXN*PAXAGXPXXXXGXRPPGXXWGGPTXXGXXPXAXXXEPPPLXP 1426
            PGG PP P   P  P   P+  G P        PG   G P      P       PP  P
Sbjct: 445  PGGSPPSPSIVPSPPSTTPS-PGSPPTSPTTPTPG---GSPPSSPTTPTPGGS--PPSSP 498

Query: 1427 XXXGXGGXXXAXXGXP-PGG 1483
                 GG   +    P PGG
Sbjct: 499  TTPTPGGSPPSSPTTPSPGG 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,713,725
Number of Sequences: 28952
Number of extensions: 399421
Number of successful extensions: 1052
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4144594560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)