Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_F11_e86_11.seq
(1494 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 149 7e-37
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 145 1e-35
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 31 0.41
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 30 0.95
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 29 1.3
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 8.8
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 8.8
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 8.8
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 149 bits (362), Expect = 7e-37
Identities = 89/190 (46%), Positives = 115/190 (60%), Gaps = 6/190 (3%)
Frame = +2
Query: 143 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 322
+E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SWR++
Sbjct: 6 REDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASWRIV 65
Query: 323 SSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPXSKVFLPQ 496
SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ SKVF +
Sbjct: 66 SSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFYYK 125
Query: 497 NEGRLLQ--VSRXSGHRRNQTFCCRGFTESXPGCFLXS--ARQNCSPHTQXXLXLASNXS 664
+G + G +R + +S G S A +P L LA N S
Sbjct: 126 MKGDYYRYLAEFAVGEKRQHS-----ADQSLEGYKAASEIATAELAPTHPIRLGLALNFS 180
Query: 665 XFYXXILNXP 694
FY ILN P
Sbjct: 181 VFYYEILNSP 190
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 145 bits (352), Expect = 1e-35
Identities = 89/192 (46%), Positives = 111/192 (57%), Gaps = 4/192 (2%)
Frame = +2
Query: 131 MXVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 310
M +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 311 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPXSKV 484
WR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ SKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 485 FLPQNEGRLLQVSRXSGHRRNQTFCCRGFTESXPGCFLXS--ARQNCSPHTQXXLXLASN 658
F + +G R C S S A P L LA N
Sbjct: 121 FYYKMKG---DYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALN 177
Query: 659 XSXFYXXILNXP 694
S FY IL+ P
Sbjct: 178 FSVFYYEILDSP 189
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = +3
Query: 480 KYSYLKMKGDYYRYLAXVATGETRHSVVEDSQKAYQDA 593
K Y KMKGDYYRYLA GE + S +AY+ A
Sbjct: 119 KVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAA 156
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 31.1 bits (67), Expect = 0.41
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +2
Query: 146 EELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVIS 325
EEL+ R + + Y+ MA + E E ++ + LLS Y N +R+ +
Sbjct: 3011 EELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNEAYQAELFYRLSN 3069
Query: 326 SIEQKTEGSERKQQMAKEYRVKVEKELREIC--YDVLCL 436
+E+ + EY +E+ L++ C Y+ C+
Sbjct: 3070 CVEKVLHNKISITDLKTEYEEILEQTLKKECKAYERSCI 3108
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 29.9 bits (64), Expect = 0.95
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 158 QRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARRSSWRVIS 325
++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V S+W S
Sbjct: 11 EQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREFSTWATFS 68
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 29.5 bits (63), Expect = 1.3
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +2
Query: 140 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 319
+K+E QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374
Query: 320 ISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 409
S E + E SE R+Q++ +E R + EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 281 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 397
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 8.8
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Frame = +2
Query: 140 DKEELVQRAKLAEQA-ERYDDMAAAMK--EVTETGVELSNEERNLLSVAYKNVVGARRSS 310
D ++RA A QA E+ + + +K E+ +L LL V + + R S
Sbjct: 265 DVRSRIERA--ARQAREKNEKLLQNVKTSEIPINAADLEGINPELLPVIEEEIRSFRDQS 322
Query: 311 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPXSKVFL 490
+K + + KEY K +++LR+ D+ LL KH I + FL
Sbjct: 323 ---AMKKREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISRIPMSTVNAFL 379
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 454 YKVLVQ*TQDIIADFSELLFYFNPIFFCHLL 362
+ L Q ++++I +EL F+ F CHLL
Sbjct: 1755 FHALSQPSRELICKMTELNFFAADFFLCHLL 1785
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,563,501
Number of Sequences: 5004
Number of extensions: 57449
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 834495254
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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