Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F11_e86_11.seq
         (1494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)            140   3e-33
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   9e-31
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     130   3e-30
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   9e-30
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   7e-16
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 33   0.45 
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score =  140 bits (339), Expect = 3e-33
 Identities = 72/119 (60%), Positives = 89/119 (74%), Gaps = 3/119 (2%)
 Frame = +2

Query: 140 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 319
           DKEE V  AKLAEQAERYDDM  +MKEV + G ELS E+RNLLSVAYKNV+GARR+SWR+
Sbjct: 3   DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTEDRNLLSVAYKNVIGARRASWRI 62

Query: 320 ISSIEQKTE--GSE-RKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPXSKVF 487
           I+SIEQK E  G +  K +M + YR  +E+EL+ IC ++L LLD  LI  + +  SKVF
Sbjct: 63  ITSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILSLLDDSLIKNSQSEESKVF 121


>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  132 bits (318), Expect = 9e-31
 Identities = 80/178 (44%), Positives = 96/178 (53%), Gaps = 1/178 (0%)
 Frame = +2

Query: 200 MAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKE 379
           MA AMKE TE    L  EERNLLSVAYKNVVGA+RSSWRVISSIEQK EGSERK+Q  + 
Sbjct: 1   MAKAMKEATEISETLEQEERNLLSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTET 60

Query: 380 YRVKVEKELREICYDVLCLLDKHLIPKASNPXSKVFLPQNEGRLLQV-SRXSGHRRNQTF 556
           YR  +E EL E+C  VL LL+  LIP A +  SKVF  + +G   +     +G  R +  
Sbjct: 61  YRQTIENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREV 120

Query: 557 CCRGFTESXPGCFLXSARQNCSPHTQXXLXLASNXSXFYXXILNXPXQGVXXSXNKAF 730
             +          +        P     L LA N S FY  I+    Q    +  KAF
Sbjct: 121 VQKAMKAYSEAQEIAEKDPKLPPTDPIRLGLALNFSVFYYEIVEDSKQACDLA-KKAF 177


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  130 bits (314), Expect = 3e-30
 Identities = 82/199 (41%), Positives = 109/199 (54%), Gaps = 7/199 (3%)
 Frame = +2

Query: 119 PSSTMXVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGA 298
           P+      +EEL+  AK+AEQAERYDDM  AM  VT+ G  L++EERNLLSVAYKNVVGA
Sbjct: 3   PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDEERNLLSVAYKNVVGA 62

Query: 299 RRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKAS---N 469
           RRSSWRVISS+EQK    E    + K+YR  +  EL   C +VL +L+ +L+       N
Sbjct: 63  RRSSWRVISSMEQK--APEEMAALTKKYREDITNELNGKCAEVLDILENYLLKDGQDDIN 120

Query: 470 PXSKVFLPQNEG----RLLQVSRXSGHRRNQTFCCRGFTESXPGCFLXSARQNCSPHTQX 637
             +KVF  +  G     L++V+     + N       + ++       +  +  SP    
Sbjct: 121 TEAKVFYLKMRGDYHRYLVEVAEGDSRKENIEKSREAYKDA------SAKAEELSPSHPI 174

Query: 638 XLXLASNXSXFYXXILNXP 694
            L LA N S FY  I N P
Sbjct: 175 RLGLALNFSVFYYEIENKP 193


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score =  128 bits (310), Expect = 9e-30
 Identities = 66/119 (55%), Positives = 89/119 (74%)
 Frame = +2

Query: 131 MXVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 310
           M V +E L+  AKL+EQ +RYD+MA  MKEV+E   +LS EERNLLSV+YKN+VG RRSS
Sbjct: 80  MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERNLLSVSYKNIVGQRRSS 139

Query: 311 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPXSKVF 487
           WRVISSIE+KT  S     + K+Y+  +EKEL+++C +VL +L++ LIP A +  +KVF
Sbjct: 140 WRVISSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVLGILER-LIPGAEDEENKVF 196



 Score = 33.1 bits (72), Expect = 0.59
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 480 KYSYLKMKGDYYRYLAXVATGE 545
           K  Y K+KGDYYRYLA  + G+
Sbjct: 194 KVFYFKLKGDYYRYLAEFSHGQ 215


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 82.6 bits (195), Expect = 7e-16
 Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
 Frame = +2

Query: 131 MXVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 310
           M   + ELVQ AKLAEQ ER++D+   MK+  E    L+ E RNLLSV YKNVVG++R +
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNKEHRNLLSVGYKNVVGSKRFA 245

Query: 311 WRVISSIEQKTEGSERKQQMAK--EYRVKVEKELREICYDVL 430
           WR +     ++    R  Q+    +Y+ K+E EL+ +C ++L
Sbjct: 246 WRHLHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCREIL 287


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 33.5 bits (73), Expect = 0.45
 Identities = 23/86 (26%), Positives = 40/86 (46%)
 Frame = +2

Query: 143 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 322
           KE+    AK  ++ ER +  A   K+  E   +   EE++ L    K     R+    + 
Sbjct: 339 KEKERLEAKQKKEQERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEEEKRKKEEEIN 398

Query: 323 SSIEQKTEGSERKQQMAKEYRVKVEK 400
           + IE+K +  E+K+Q  +E   K E+
Sbjct: 399 AKIEEKKKREEKKKQEEEEKMKKKEQ 424


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
 Frame = +2

Query: 143 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGAR------R 304
           ++ L +  K A   +R   +A+A+ +     +   +     LS   K VV  +      +
Sbjct: 279 QKTLSEMFKQAVTEDRPKMLASAITKALNQDIHSPSALNLPLSTPAKQVVKTKWDRIREK 338

Query: 305 SSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASN 469
             W ++S  E+    +ER++Q   E +VK E++ R+   ++  +   HL  K SN
Sbjct: 339 HQWNLLSEDEKNKIKAERRKQKRLELKVKREEKERKRLEELKRVSFAHLGMKLSN 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,351,463
Number of Sequences: 59808
Number of extensions: 428587
Number of successful extensions: 1220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4835964124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)