Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F10_e78_12.seq
         (1416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    33   0.072
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    30   0.67 
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    27   4.8  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    27   6.3  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   6.3  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    27   8.3  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   8.3  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 33.5 bits (73), Expect = 0.072
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
 Frame = +3

Query: 54  AQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDT-------AIVRFH 212
           A  SG   TS  + +  L PSVT  ++ E F+  G V                 A V FH
Sbjct: 70  ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFH 129

Query: 213 KEWDAERAIKMFDRTRIEGR 272
              D E+A+   + T I+GR
Sbjct: 130 NMEDGEKALDELNYTLIKGR 149


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 81  SDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKEWDAERAIK 242
           S  + ++NLP  V +  + E FS+ GDVK  +T+   T  +     +D  +AI+
Sbjct: 194 SRYLFVTNLPRIVPYATLLELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQAIQ 247


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 30  NQSYGRENAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECG 158
           N+    EN++ S     +  V I  LP  VT   I E F +CG
Sbjct: 92  NKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCG 134


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 90  VMISNLPPSVTWQLIRE---KFSECGDVK-FAETTGPDTAIVRFHKEWDAERAIKMFDRT 257
           V + N+ P  T   ++E   K+S    V  F+ET      I  F    DAE+A++     
Sbjct: 137 VHMDNISPVTTNGSLKESLRKYSSIIAVNIFSETGDLKKGIAIFQDLSDAEQAVQYLSNC 196

Query: 258 RIEGRTI 278
           +I+GR I
Sbjct: 197 KIDGRLI 203


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 302 ISSEISHIDGSTLDPCSVEHFYCPLGVPLLMETNYSRVW 186
           +S E + +DG+ +   S    Y P G  L + T+YS  W
Sbjct: 204 VSKESTLVDGNPVCSSSSNPQYLPEGADLTLVTSYSVSW 242


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = -1

Query: 435 DINITGPLDEVNYEIKTEHTSFAGRRAHTNHAKERFAIPSLTSHD*LRNISHRWFYP 265
           +I I G +D+V     TE + + G        KE          D  R + HRW YP
Sbjct: 255 EILIPGIMDQVAELTPTEDSIYDGIDYTMEDLKEAVGADISIYPDPKRTLQHRWRYP 311


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 87  MVMISNLPPSVTWQLIREKFSECGDVKFAETTGPD-TAIVRF 209
           M+ +SNLP   +   I   FS  G+VK      PD +AIV +
Sbjct: 1   MLYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSY 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,095,178
Number of Sequences: 5004
Number of extensions: 76590
Number of successful extensions: 214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 786922488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)