BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030623sawa_F10_e78_12.seq (1416 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 44 3e-04 SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.026 SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 34 0.24 SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10) 33 0.73 SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.73 SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.3 SB_21487| Best HMM Match : MAM (HMM E-Value=0) 29 6.8 SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.0 >SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) Length = 507 Score = 44.0 bits (99), Expect = 3e-04 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Frame = +3 Query: 90 VMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKEWDAERAIKMFDRTRI-- 263 V +S LPP+ +WQ +++ E GDV F + T +V F + D + AI+ D ++ Sbjct: 382 VQVSGLPPTGSWQDLKDHMREAGDVLFTDVFKDGTGVVEFARYDDMKFAIRNLDDSKFRS 441 Query: 264 -EGRTIDVR 287 EG T +R Sbjct: 442 HEGETSYIR 450 Score = 32.7 bits (71), Expect = 0.73 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Frame = +3 Query: 69 REKTSDM-VMISNLPPSVTWQLIREKFSECG-----DVKFAETTGPDTAIVRFHKEWDAE 230 R ++D V + NLP V + + + F + G D+K GP A V F DAE Sbjct: 255 RSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAE 314 Query: 231 RAIKMFDRTRIEGRTIDVRY 290 A+K D +G I V + Sbjct: 315 DAVKGRDGHEFDGYRIRVEF 334 >SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 548 Score = 37.5 bits (83), Expect = 0.026 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = +3 Query: 51 NAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRF 209 N + E+ V ++NL P +T +++ FS CGD+K+ G D R+ Sbjct: 61 NVDANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRY 113 >SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) Length = 1118 Score = 34.3 bits (75), Expect = 0.24 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +3 Query: 75 KTSDMVMISNLPPSVTWQLIREKFSECGDVKF--AETTGPDTAIVRFHKEWDAERAIKMF 248 +T + I NL V+WQ +++ + GDV + A ++ F + D +RA+K Sbjct: 94 RTPWRMTIENLSSRVSWQDLKDFCRQVGDVTYGDAHKQRQGEGVIEFSCKRDLKRALKKL 153 Query: 249 DRTRIEGRTI 278 D + G+ I Sbjct: 154 DGEELNGKRI 163 >SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10) Length = 141 Score = 32.7 bits (71), Expect = 0.73 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = +3 Query: 75 KTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKEWDAERAIKMFDR 254 +TS V ISNL P+V+ Q I E F G +K + A V + + DA A + Sbjct: 13 QTSTRVTISNLHPAVSRQDIEELFGAIGVLKSCKMLRAGMAEVVYTTKEDAVTAYARYHN 72 Query: 255 TRIEGRTIDVR 287 ++G+ + + Sbjct: 73 RNLDGQPMQCK 83 >SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 391 Score = 32.7 bits (71), Expect = 0.73 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = +3 Query: 75 KTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKEWDAERAIKMFDR 254 +TS V ISNL P+V+ Q I E F G +K + A V + + DA A + Sbjct: 218 QTSTRVTISNLHPAVSRQDIEELFGAIGVLKSCKMLRAGMAEVVYTTKEDAVTAYARYHN 277 Query: 255 TRIEGRTIDVR 287 ++G+ + + Sbjct: 278 RNLDGQPMQCK 288 >SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 333 Score = 31.9 bits (69), Expect = 1.3 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Frame = +3 Query: 90 VMISNLPPSVTWQLIREKFSECGDVK----FAETTGPDTAI--VRFHKEWDAERAIKMFD 251 + +SNLP I E FS+ G VK G V + +E A A+ D Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232 Query: 252 RTRIEGRTIDV 284 +T ++GRTI V Sbjct: 233 KTEVKGRTISV 243 >SB_21487| Best HMM Match : MAM (HMM E-Value=0) Length = 874 Score = 29.5 bits (63), Expect = 6.8 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 311 HPTISSEISHIDGSTLDPCSVEHFYC 234 HPT++ I +DG + PC E +C Sbjct: 187 HPTVTKNILFLDGLPVFPCDFEQGFC 212 >SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 435 Score = 29.1 bits (62), Expect = 9.0 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Frame = +3 Query: 78 TSDMVMISNLPPSVTWQLIREKFSECGDVKFAE--TTGPDTAIVRFHKEWDAERAIKMFD 251 T +++ NL WQ +++ + G+V F + + F E D A+K D Sbjct: 341 TEYRLIVENLSTRAGWQDLKDYMRQAGEVTFTQCHKDRVGEGVCDFSNESDMLYALKKLD 400 Query: 252 RTRIEGRTI 278 T + G+ I Sbjct: 401 GTELFGKRI 409 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 30,287,776 Number of Sequences: 59808 Number of extensions: 581418 Number of successful extensions: 1243 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1241 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4530781922 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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