Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F10_e78_12.seq
         (1416 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578804-1|AAT07309.1|  133|Anopheles gambiae maverick protein.        29   0.43 
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    27   0.99 
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    27   1.7  

>AY578804-1|AAT07309.1|  133|Anopheles gambiae maverick protein.
          Length = 133

 Score = 28.7 bits (61), Expect = 0.43
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 395 K*KPSTHHLLVAERIQTTLKNDLQYPHSHPTISSEISHIDGSTLDP 258
           K  P+THH L+   +   +K D+  P   P   S + HID    DP
Sbjct: 69  KFNPATHHALLQSLLHEHIKYDVPKPCCAP---SSLDHIDVLHADP 111


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 152 VWRC*VRRDNWTRHGYSSFP*GVGRREGNKNVRQNTDRG*NHRCEIFLS*SWDVSEGIAN 331
           V  C ++  +WT  G+      +  + G+  V    D       E ++S  WD+ E  A 
Sbjct: 163 VQTCVLKLGSWTYDGFKVDLRHMDEKSGSNIVDVGVDLS-----EFYMSVEWDILEVPAV 217

Query: 332 RSLAWFVCARRPANDV 379
           R+  ++ C   P  D+
Sbjct: 218 RNEKFYTCCDEPYLDI 233


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +2

Query: 161 C*VRRDNWTRHGYSSFP*GVGRREGNKNVRQNTDRG*NHRCEIFLS*SWDVSEGIANRSL 340
           C ++  +WT  G+      +  + G+  V    D       E ++S  WD+ E  A R+ 
Sbjct: 166 CVLKFGSWTYDGFKVDLRHMDEKSGSNIVDVGVDLS-----EFYMSVEWDILEVPAVRNE 220

Query: 341 AWFVCARRPANDV 379
            ++ C   P  D+
Sbjct: 221 KFYTCCDEPYLDI 233


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,038,153
Number of Sequences: 2352
Number of extensions: 18924
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 164183580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)