Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_F10_e78_12.seq
(1416 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 53 6e-07
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 48 1e-05
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 48 1e-05
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 37 0.030
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 37 0.030
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 29 6.0
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 29 6.0
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 29 6.0
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 29 8.0
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +3
Query: 87 MVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKEWDAERAIKMFDRTRIE 266
+++I NLP TWQ++R++ G+V + P A +RF DAERA + +E
Sbjct: 386 VIIIRNLPSDYTWQIVRDRVRNFGEVDSVDMMAPGAARIRFATFQDAERARAALYGSTVE 445
Query: 267 GRTIDVRY 290
GR I V Y
Sbjct: 446 GRMISVDY 453
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 48.4 bits (110), Expect = 1e-05
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +3
Query: 42 GRENAQQSG-REKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKE 218
GR + G + +T V++ LPP+ +WQ +++ + GDV +A+ T +V F +
Sbjct: 108 GRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRY 167
Query: 219 WDAERAIKMFDRTRI---EGRTIDVR 287
D + A++ D T+ EG T +R
Sbjct: 168 EDVKYAVRKLDDTKFRSHEGETAYIR 193
Score = 38.3 bits (85), Expect = 0.013
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +3
Query: 90 VMISNLPPSVTWQLIREKFSECGDVKFAETT---GPDTAIVRFHKEWDAERAIKMFDRTR 260
V + NLP V + + + F + G +K+ + GP A V F DAE A++ D
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70
Query: 261 IEGRTIDVRY 290
+GR I V +
Sbjct: 71 FDGRRIRVEF 80
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 48.4 bits (110), Expect = 1e-05
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +3
Query: 42 GRENAQQSG-REKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKE 218
GR + G + +T V++ LPP+ +WQ +++ + GDV +A+ T +V F +
Sbjct: 108 GRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRY 167
Query: 219 WDAERAIKMFDRTRI---EGRTIDVR 287
D + A++ D T+ EG T +R
Sbjct: 168 EDVKYAVRKLDDTKFRSHEGETAYIR 193
Score = 38.3 bits (85), Expect = 0.013
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +3
Query: 90 VMISNLPPSVTWQLIREKFSECGDVKFAETT---GPDTAIVRFHKEWDAERAIKMFDRTR 260
V + NLP V + + + F + G +K+ + GP A V F DAE A++ D
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70
Query: 261 IEGRTIDVRY 290
+GR I V +
Sbjct: 71 FDGRRIRVEF 80
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 37.1 bits (82), Expect = 0.030
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +3
Query: 90 VMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKEWDAERAIKMFDRTRIEG 269
+ + NLP V ++E FS GD+ +G A +R AE A + D I G
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHAESAKEAIDGRIIHG 177
Query: 270 RTIDVRYF*ANRGM*VRVLQI 332
R + VR+ A G +RV ++
Sbjct: 178 RQVRVRF--AVHGAAIRVKEL 196
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 37.1 bits (82), Expect = 0.030
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +3
Query: 90 VMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKEWDAERAIKMFDRTRIEG 269
+ + NLP V ++E FS GD+ +G A +R AE A + D I G
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHAESAKEAIDGRIIHG 177
Query: 270 RTIDVRYF*ANRGM*VRVLQI 332
R + VR+ A G +RV ++
Sbjct: 178 RQVRVRF--AVHGAAIRVKEL 196
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 29.5 bits (63), Expect = 6.0
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = +3
Query: 60 QSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDT-------AIVRFHKE 218
Q+G T + + +L P V ++ EKFS G V + A V F +
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 219 WDAERAIKMFDRTRIEGRTIDVRY 290
DAERA+ + + G+ + + +
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMW 107
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 29.5 bits (63), Expect = 6.0
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = +3
Query: 60 QSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDT-------AIVRFHKE 218
Q+G T + + +L P V ++ EKFS G V + A V F +
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 219 WDAERAIKMFDRTRIEGRTIDVRY 290
DAERA+ + + G+ + + +
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMW 107
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 29.5 bits (63), Expect = 6.0
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = +3
Query: 60 QSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDT-------AIVRFHKE 218
Q+G T + + +L P V ++ EKFS G V + A V F +
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 219 WDAERAIKMFDRTRIEGRTIDVRY 290
DAERA+ + + G+ + + +
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMW 107
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 29.1 bits (62), Expect = 8.0
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Frame = +3
Query: 45 RENAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVK------FAETTGPDTAIVR 206
R+N + + ++ I NLP +T + + E F + G V+ AET G TA V
Sbjct: 6 RQNRGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRG--TAFVV 63
Query: 207 FHKEWDAERAIKMFDRTRIEGRTIDVRYF*ANR 305
+ +DA+ A + + R + V Y+ A +
Sbjct: 64 YEDIFDAKTACEHLSGYNVSNRYLVVLYYQATK 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,576,105
Number of Sequences: 27780
Number of extensions: 425016
Number of successful extensions: 1136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4027384386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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