Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F10_e78_12.seq
         (1416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    29   0.074
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.30 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.52 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   3.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   6.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 0.074
 Identities = 16/73 (21%), Positives = 34/73 (46%)
 Frame = +2

Query: 161 C*VRRDNWTRHGYSSFP*GVGRREGNKNVRQNTDRG*NHRCEIFLS*SWDVSEGIANRSL 340
           C ++  +WT  GY+     + + E +  +    D       + ++S  WD+ +  A R+ 
Sbjct: 159 CFMKFGSWTYDGYTVDLRHLAQTEDSNQIEVGIDL-----TDYYISVEWDIIKVPAVRNE 213

Query: 341 AWFVCARRPANDV 379
           A+++C   P  D+
Sbjct: 214 AFYICCEEPYPDI 226


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 0.30
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 152 VWRC*VRRDNWTRHGYSSFP*GVGRREGNKNVRQNTDRG*NHRCEIFLS*SWDVSEGIAN 331
           V  C ++  +WT  G+      +  + G+  V    D       E ++S  WD+ E  A 
Sbjct: 164 VQTCVLKLGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLS-----EFYMSVEWDILEVPAV 218

Query: 332 RSLAWFVCARRPANDV 379
           R+  ++ C   P  D+
Sbjct: 219 RNEKFYTCCDEPYLDI 234


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.52
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +2

Query: 161 C*VRRDNWTRHGYSSFP*GVGRREGNKNVRQNTDRG*NHRCEIFLS*SWDVSEGIANRSL 340
           C ++  +WT  G+      +  + G+  V    D       E ++S  WD+ E  A R+ 
Sbjct: 167 CVLKFGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLS-----EFYMSVEWDILEVPAVRNE 221

Query: 341 AWFVCARRPANDV 379
            ++ C   P  D+
Sbjct: 222 KFYTCCDEPYLDI 234


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 284 EIFLS*SWDVSEGIANRSLAWFVCARRPANDV 379
           E + S  WD+ E  A R+  ++ C   P  D+
Sbjct: 199 EFYTSVEWDILEVPAVRNEKFYTCCDEPYLDI 230


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 380  THHLLVAERIQTTLKNDLQYPHSHPTI 300
            TH+L+  + +   L +DL    +HP I
Sbjct: 970  THYLVSKDGVSLNLDSDLPVEPTHPII 996


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,656
Number of Sequences: 438
Number of extensions: 5652
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 49345893
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)