Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_F10_e78_12.seq
(1416 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 39 0.009
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 37 0.028
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 36 0.064
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 36 0.064
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 34 0.20
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 34 0.26
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.26
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.26
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.26
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 33 0.45
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.45
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 32 1.0
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 32 1.0
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 32 1.0
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 32 1.0
At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ... 31 1.4
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 31 1.8
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 31 2.4
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 30 3.2
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 30 3.2
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 5.6
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 29 7.4
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 29 7.4
At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR ... 29 7.4
At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identic... 29 9.8
At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identic... 29 9.8
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 38.7 bits (86), Expect = 0.009
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +3
Query: 51 NAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPD----TAIVRFHKE 218
+A ++ ++ V+++ LPPS +WQ +++ + GDV F+E PD + +V +
Sbjct: 98 SASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVF-PDRKGMSGVVDYSNY 156
Query: 219 WDAERAIKMFDRT 257
D + AI+ D T
Sbjct: 157 DDMKYAIRKLDAT 169
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 37.1 bits (82), Expect = 0.028
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Frame = +3
Query: 57 QQSGREKT---SDMVMISNLPPSVTWQLIREKFSECGDVK--FAETT-GPDT----AIVR 206
++ G EK+ + V +S LP S+T + E FSE G V+ F T G D A V+
Sbjct: 8 RKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVK 67
Query: 207 FHKEWDAERAIKMFDRTRIEGRTIDVR 287
F + D RAI++ + + + GR I V+
Sbjct: 68 FALQEDVNRAIELKNGSTVGGRRITVK 94
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 35.9 bits (79), Expect = 0.064
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Frame = +3
Query: 75 KTSDMVMISNLPPSVTWQLIREKFSECGDVK----FAETTG--PDTAIVRFHKEWDAERA 236
+T + ISNL V+ + I+E FSE GD+K + +G TA V F + DA A
Sbjct: 105 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAA 164
Query: 237 IKMFDRTRIEGRTIDV 284
+K ++ +++G+ + +
Sbjct: 165 VKRYNNVQLDGKLMKI 180
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 35.9 bits (79), Expect = 0.064
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +3
Query: 9 MAAVSMPNQ-SYGRENAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGD-VKFAETT 182
M A + N+ S G ++G K + +SNL PS+T + +R+ FS CG V + T
Sbjct: 327 MQAQAQSNKGSLGSPEKGENGDLKK--FLQVSNLSPSLTTEQLRQLFSFCGTVVDCSITD 384
Query: 183 GPDTAIVRFHKEWDAERAIKMFDRTRIEGRTIDV 284
A + + +A A+ + + T + GR ++V
Sbjct: 385 SKHIAYIEYSNSEEATAALAL-NNTEVFGRALNV 417
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 34.3 bits (75), Expect = 0.20
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 90 VMISNLPPSVTWQLIREKFSECGDVKFAETTGPDT---AIVRFHKEWDAERAIKMFDRT 257
V++ LP S +WQ +++ + GDV FAE T +V + D + AI+ D T
Sbjct: 124 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLDDT 182
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.9 bits (74), Expect = 0.26
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
Frame = +3
Query: 9 MAAVSMPNQSYGRENAQQSGREKTSDM-----VMISNLPPSVTWQLIREKFSECGDVKFA 173
+ +V+ S E +Q+ E+T + + + NLP S++ I E F +CG V
Sbjct: 65 LCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNV 124
Query: 174 E----TTGPDT--AIVRFHKEWDAERAIKMFDRTRIEGRTIDVRY 290
E G + A V +A+ AI FD ++ GR I V +
Sbjct: 125 EIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSF 169
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 33.9 bits (74), Expect = 0.26
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +3
Query: 42 GRENAQQSGREKTSDM-VMISNLPPSVTWQLIREKFSECGDVKFAET---TGPDTAIVRF 209
GR + G + S+ V+++ LP S +WQ +++ + GDV F++ T +V +
Sbjct: 104 GRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDY 163
Query: 210 HKEWDAERAIKMFDRT 257
D + A+K D T
Sbjct: 164 TCYEDMKYALKKLDDT 179
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 33.9 bits (74), Expect = 0.26
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +3
Query: 42 GRENAQQSGREKTSDM-VMISNLPPSVTWQLIREKFSECGDVKFAET---TGPDTAIVRF 209
GR + G + S+ V+++ LP S +WQ +++ + GDV F++ T +V +
Sbjct: 104 GRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDY 163
Query: 210 HKEWDAERAIKMFDRT 257
D + A+K D T
Sbjct: 164 TCYEDMKYALKKLDDT 179
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 33.9 bits (74), Expect = 0.26
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +3
Query: 42 GRENAQQSGREKTSDM-VMISNLPPSVTWQLIREKFSECGDVKFAET---TGPDTAIVRF 209
GR + G + S+ V+++ LP S +WQ +++ + GDV F++ T +V +
Sbjct: 104 GRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDY 163
Query: 210 HKEWDAERAIKMFDRT 257
D + A+K D T
Sbjct: 164 TCYEDMKYALKKLDDT 179
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 33.1 bits (72), Expect = 0.45
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +3
Query: 42 GRENAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVK-----FAETTGPD-TAIV 203
G A SG E + ++NL VT + IRE FSE G+V+ + + P TA V
Sbjct: 80 GLRAAGASGVE-VGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEV 138
Query: 204 RFHKEWDAERAIKMFDRTRIEGR 272
+ + DA +A+K ++ ++GR
Sbjct: 139 VYPRRSDAFQALKKYNNVLLDGR 161
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.1 bits (72), Expect = 0.45
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 60 QSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAE-TTGPDTAIVRFHKEWDAERA 236
QS E T+ + + + P V + +R+ FS+ G+V + G V+F AE A
Sbjct: 313 QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDA 372
Query: 237 IKMFDRTRIEGRTI 278
I+ + T I T+
Sbjct: 373 IESLNGTVIGKNTV 386
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 31.9 bits (69), Expect = 1.0
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Frame = +3
Query: 30 NQSYGRENAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVK----FAETTG--PD 191
++S + + S +T + ISNL V + I+E F+E G++K + +G
Sbjct: 68 DRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKG 127
Query: 192 TAIVRFHKEWDAERAIKMFDRTRIEGRTIDV 284
TA V + + DA A+K ++ +++G+ + +
Sbjct: 128 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKI 158
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 31.9 bits (69), Expect = 1.0
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Frame = +3
Query: 30 NQSYGRENAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVK----FAETTG--PD 191
++S + + S +T + ISNL V + I+E F+E G++K + +G
Sbjct: 4 DRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKG 63
Query: 192 TAIVRFHKEWDAERAIKMFDRTRIEGRTIDV 284
TA V + + DA A+K ++ +++G+ + +
Sbjct: 64 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKI 94
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 31.9 bits (69), Expect = 1.0
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Frame = +3
Query: 30 NQSYGRENAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVK----FAETTG--PD 191
++S + + S +T + ISNL V + I+E F+E G++K + +G
Sbjct: 70 DRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKG 129
Query: 192 TAIVRFHKEWDAERAIKMFDRTRIEGRTIDV 284
TA V + + DA A+K ++ +++G+ + +
Sbjct: 130 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKI 160
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.9 bits (69), Expect = 1.0
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Frame = +3
Query: 45 RENAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECG---DVKFAETTGPDTA----IV 203
++ Q SG E + + NLP ++T + + F E G DV+ D + V
Sbjct: 106 KQTTQASGEE---GRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
Query: 204 RFHKEWDAERAIKMFDRTRIEGRTIDVRYF*ANRG 308
+A+ A++MF+ ++I GRT+ V + RG
Sbjct: 163 TMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRG 197
>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 894
Score = 31.5 bits (68), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 587 LPGLSFKYVNLNRKERYHCLLYCNFF 664
LP L + Y NLN+++ C LYC+ F
Sbjct: 392 LPILKYSYDNLNKEQVKPCFLYCSLF 417
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 51 NAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETT--GPDTAIVRFHKEWD 224
NA G + S ++M NL P+V+ +R F G+VK T + V F D
Sbjct: 174 NAVPEGNNQGSLVIM--NLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRD 231
Query: 225 AERAIKMFDRTRIEGRTIDVRY 290
A +A+++ + I G+ + +++
Sbjct: 232 AAKALRVMNGKVISGKPMVIQF 253
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 30.7 bits (66), Expect = 2.4
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +3
Query: 75 KTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETT-GPDT------AIVRFHKEWDAER 233
+T + + NL +VT + + F ECGDV A DT V + + + E
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 234 AIKMFDRTRIEGRTIDV 284
A++ D +EGR I V
Sbjct: 234 ALESLDGFELEGRAIRV 250
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 30.3 bits (65), Expect = 3.2
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +3
Query: 42 GRENAQQSGREKTSDM-VMISNLPPSVTWQLIREKFSECGDVKFAETTGP---DTAIVRF 209
G ++ G + S+ V++S LP S +WQ +++ + G+V F++ T IV +
Sbjct: 105 GDGGGRERGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDY 164
Query: 210 HKEWDAERAIK 242
D + AIK
Sbjct: 165 TSYEDMKYAIK 175
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 30.3 bits (65), Expect = 3.2
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 51 NAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAE-TTGPDTAIVRFHKEWDA 227
N S E + + + L VT + + + FS+ G+V + G V+F A
Sbjct: 316 NGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSA 375
Query: 228 ERAIKMFDRTRIEGRTI 278
E AI + T I T+
Sbjct: 376 EEAIGNLNGTVIGKNTV 392
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 29.5 bits (63), Expect = 5.6
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 33 QSYGRENAQQSGREKTS--DMVMISNLPPSVTWQLIREKFSECGDVK 167
+ YG + ++ +E + V + NLPP+VT + F + G +K
Sbjct: 1177 KDYGNKGGNENNQEPRALYAAVHVKNLPPNVTTDWVENAFKQFGPIK 1223
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 42 GRENAQQSGREKTSDM-VMISNLPPSVTWQLIREKFSECGDVKFAE 176
G ++ G + S+ V++S LP S +WQ +++ + G+V F++
Sbjct: 105 GDGGGRERGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQ 150
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.1 bits (62), Expect = 7.4
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 90 VMISNLPPSVTWQLIREKFSECGDVKFAE-TTGPDTAIVRFHKEWDAERAIKMFDRTRIE 266
+ + L SVT + +++ FSE G++ + G V+F +AE A++ + T I
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 367
Query: 267 GRTI 278
+T+
Sbjct: 368 KQTV 371
>At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 885
Score = 29.1 bits (62), Expect = 7.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 587 LPGLSFKYVNLNRKERYHCLLYCNFF 664
LP L + Y +LN ++ C LYC+ F
Sbjct: 392 LPILKYSYDSLNGEDAKSCFLYCSLF 417
>At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 327 QIVL*RGLYALGDQQMMCARFLFHNLLRLMVQ*CLCPDFCRF 452
++++ R + L D + CARF+F L+++ Q C+ + RF
Sbjct: 430 EVLVRRQISRLLDPSLQCARFIFDELVKISHQ-CMMKELQRF 470
>At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 327 QIVL*RGLYALGDQQMMCARFLFHNLLRLMVQ*CLCPDFCRF 452
++++ R + L D + CARF+F L+++ Q C+ + RF
Sbjct: 430 EVLVRRQISRLLDPSLQCARFIFDELVKISHQ-CMMKELQRF 470
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,893,708
Number of Sequences: 28952
Number of extensions: 381295
Number of successful extensions: 912
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3730135104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -