Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_F07_e54_11.seq
(1485 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 99 1e-19
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 52 3e-05
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 47 0.001
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 46 0.003
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 44 0.008
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 37 1.2
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 37 1.6
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 99 bits (238), Expect = 1e-19
Identities = 48/82 (58%), Positives = 53/82 (64%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYKFAGXXXXXXXXXXXXTXXXKQIGGEKNGGXRTVLL 276
RNYDLGNGV+RF K +M+H KA YKF G T KQIGGEKNGG RTV L
Sbjct: 30 RNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPL 89
Query: 277 XSRKSFYPTQDKXRGRSXGKXF 342
RKSFYPTQ+K R S G+ F
Sbjct: 90 KRRKSFYPTQEKIRASSGGRPF 111
Score = 46.4 bits (105), Expect = 0.002
Identities = 21/27 (77%), Positives = 21/27 (77%)
Frame = +2
Query: 335 RXFSXHVRRTRPNLTPGXVCILLAGRH 415
R FS HVRR RPNL G VCILLAGRH
Sbjct: 109 RPFSKHVRRIRPNLKIGTVCILLAGRH 135
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 52.4 bits (120), Expect = 3e-05
Identities = 26/69 (37%), Positives = 35/69 (50%)
Frame = +1
Query: 100 NYDLGNGVLRFXKXRMYHXKAIYKFAGXXXXXXXXXXXXTXXXKQIGGEKNGGXRTVLLX 279
N L G+LR+ K +MY +A+Y+ K+IGG KNGG RTV L
Sbjct: 23 NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLK 82
Query: 280 SRKSFYPTQ 306
K+ YPT+
Sbjct: 83 KSKASYPTK 91
Score = 41.5 bits (93), Expect = 0.055
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS H R TR NLTPG V ILLAGRH
Sbjct: 103 FSEHKRNTRRNLTPGTVLILLAGRH 127
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 47.2 bits (107), Expect = 0.001
Identities = 25/74 (33%), Positives = 36/74 (48%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYKFAGXXXXXXXXXXXXTXXXKQIGGEKNGGXRTVLL 276
RN +L G+ R+ + +Y +A+YK T K IGG+KNGG R V +
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 277 XSRKSFYPTQDKXR 318
+YPT+D R
Sbjct: 70 QRESRYYPTEDVRR 83
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 46.0 bits (104), Expect = 0.003
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYKFAGXXXXXXXXXXXXTXXXKQIGGEKNGGXRTVLL 276
+N+ L GV F + +M+H + ++K K++ GEKNGG R + L
Sbjct: 26 KNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPL 85
Query: 277 XSRKSFYPTQD 309
+ YPT+D
Sbjct: 86 KKERRSYPTED 96
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 44.4 bits (100), Expect = 0.008
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L G+ R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 37.5 bits (83), Expect = 0.89
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 335 RXFSXHVRRTRPNLTPGXVCILLAGRH 415
+ FS HVR+ R ++TPG + I+L GRH
Sbjct: 131 KPFSQHVRKLRASITPGTILIILTGRH 157
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 37.1 bits (82), Expect = 1.2
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
F+ H RR R ++TPG V ILLAGRH
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRH 110
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 36.7 bits (81), Expect = 1.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2
Query: 332 ARXFSXHVRRTRPNLTPGXVCILLAGRH 415
A+ FS HVR+ R ++ PG V ILLAG H
Sbjct: 77 AKCFSNHVRKIRSSIQPGTVLILLAGPH 104
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 432,537,633
Number of Sequences: 1657284
Number of extensions: 4805311
Number of successful extensions: 5951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5949
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 157278995250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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