Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F07_e54_11.seq
         (1485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    29   1.2  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    28   2.9  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   8.8  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 359 RTRPNLTPGXVCILLAGR 412
           + R +L PG VCILLAGR
Sbjct: 47  KLRASLAPGTVCILLAGR 64


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = -3

Query: 412 SARQQNAHXAXSEVRSXPTHMXTEXSCHXNDPXSCPEWGRMIS----CXXAGLYDXLHSF 245
           ++R++++H    +  S P H  +   C      + P W R  S    C   GLY  +H  
Sbjct: 148 TSRRRSSHNQHED--SSPPHEPSVTFCQNCATTNTPLWRRDESGNPICNACGLYYKIHGV 205

Query: 244 HR 239
           HR
Sbjct: 206 HR 207


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 211 SWAFQLSGSSYRQTYI*PSCGTSCXXRNG 125
           SW  QLS SS+       +C  SC  RNG
Sbjct: 196 SWVVQLSFSSWNVVGDSATCLLSCSSRNG 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,313
Number of Sequences: 5004
Number of extensions: 20250
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 828548732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)