Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_F07_e54_11.seq
(1485 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022444-1|AAH22444.1| 288|Homo sapiens ribosomal protein L6 pr... 47 2e-04
D17554-1|BAA04491.1| 288|Homo sapiens DNA-binding protein TAXRE... 46 3e-04
BC104826-1|AAI04827.1| 288|Homo sapiens ribosomal protein L6 pr... 46 3e-04
BC104824-1|AAI04825.1| 288|Homo sapiens ribosomal protein L6 pr... 46 3e-04
BC071912-1|AAH71912.1| 288|Homo sapiens ribosomal protein L6 pr... 46 3e-04
BC032299-1|AAH32299.1| 288|Homo sapiens ribosomal protein L6 pr... 46 3e-04
BC031009-1|AAH31009.1| 288|Homo sapiens ribosomal protein L6 pr... 46 3e-04
BC020679-1|AAH20679.1| 288|Homo sapiens ribosomal protein L6 pr... 46 3e-04
BC004138-1|AAH04138.1| 288|Homo sapiens ribosomal protein L6 pr... 46 3e-04
AF261087-1|AAF99680.1| 289|Homo sapiens DNA-binding protein TAX... 46 3e-04
AB042820-1|BAB17292.1| 288|Homo sapiens ribosomal protein L6 pr... 46 3e-04
S71022-1|AAB30819.1| 207|Homo sapiens neoplasm-related C140 pro... 38 0.071
X69391-1|CAA49188.1| 288|Homo sapiens ribosomal protein L6 prot... 38 0.12
>BC022444-1|AAH22444.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 46.8 bits (106), Expect = 2e-04
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L GV R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGVGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
>D17554-1|BAA04491.1| 288|Homo sapiens DNA-binding protein
TAXREB107 protein.
Length = 288
Score = 46.4 bits (105), Expect = 3e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L G+ R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
>BC104826-1|AAI04827.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 46.4 bits (105), Expect = 3e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L G+ R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
>BC104824-1|AAI04825.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 46.4 bits (105), Expect = 3e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L G+ R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
>BC071912-1|AAH71912.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 46.4 bits (105), Expect = 3e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L G+ R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
>BC032299-1|AAH32299.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 46.4 bits (105), Expect = 3e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L G+ R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
>BC031009-1|AAH31009.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 46.4 bits (105), Expect = 3e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L G+ R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
>BC020679-1|AAH20679.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 46.4 bits (105), Expect = 3e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L G+ R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
>BC004138-1|AAH04138.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 46.4 bits (105), Expect = 3e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L G+ R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
>AF261087-1|AAF99680.1| 289|Homo sapiens DNA-binding protein
TAXREB107 protein.
Length = 289
Score = 46.4 bits (105), Expect = 3e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L G+ R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 34.3 bits (75), Expect = 1.2
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGR 412
FS HVR+ R ++TPG + I+L GR
Sbjct: 133 FSQHVRKLRASITPGTILIILTGR 156
>AB042820-1|BAB17292.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 46.4 bits (105), Expect = 3e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 97 RNYDLGNGVLRFXKXRMYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXR 264
RN L G+ R+ + MY KA+YK A K +GG+KNGG R
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 265 TVLLXSRKSFYPTQDKXR 318
V L +YPT+D R
Sbjct: 106 VVKLRKMPRYYPTEDVPR 123
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
>S71022-1|AAB30819.1| 207|Homo sapiens neoplasm-related C140
product protein.
Length = 207
Score = 38.3 bits (85), Expect = 0.071
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +1
Query: 145 MYHXKAIYK----FAGXXXXXXXXXXXXTXXXKQIGGEKNGGXRTVLLXSRKSFYPTQDK 312
MY KA+YK A K +GG+KNGG R V L +YPT+D
Sbjct: 1 MYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDV 60
Query: 313 XR 318
R
Sbjct: 61 PR 62
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 72 FSQHVRKLRASITPGTILIILTGRH 96
>X69391-1|CAA49188.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 37.5 bits (83), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 341 FSXHVRRTRPNLTPGXVCILLAGRH 415
FS HVR+ R ++TPG + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
Score = 37.1 bits (82), Expect = 0.16
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 229 KQIGGEKNGGXRTVLLXSRKSFYPTQDKXR 318
K +GG+KNGG R V L +YPT+D R
Sbjct: 94 KPVGGDKNGGTRVVKLRKMPRYYPTEDVPR 123
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,772,852
Number of Sequences: 237096
Number of extensions: 856445
Number of successful extensions: 2346
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2344
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 21978462734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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