Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F06_e46_12.seq
         (1519 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   3.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   3.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   3.4  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 129 PIHQNMAPIPISIPAGASLTPVS 197
           P+H +M P  + +  G SLTP++
Sbjct: 366 PMHHDMLPETMHMGMGPSLTPLA 388


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 13/52 (25%), Positives = 20/52 (38%)
 Frame = +3

Query: 9   WVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPIS 164
           W        +PT + Q + SP     TY   A      E P+  +   +P+S
Sbjct: 178 WSATPQAGSTPTYQTQGLLSPSYGGTTYSFTADFRPPQETPVLASYKSVPMS 229


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 129 PIHQNMAPIPISIPAGASLTPVS 197
           P+H +M P  + +  G SLTP++
Sbjct: 366 PMHHDMLPETMHMGMGPSLTPLA 388


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,794
Number of Sequences: 336
Number of extensions: 3815
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45579125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)