Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F06_e46_12.seq
         (1519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    33   0.078
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.42 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    28   2.9  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   6.8  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    27   6.8  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 33.5 bits (73), Expect = 0.078
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
 Frame = +3

Query: 105 PQYSQPEVPIHQNMAPI--PISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQ---EQ 269
           P YSQP  P  +   P     S+P+     P  L   Q+ P   PV P    ++      
Sbjct: 100 PSYSQPSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPP--PVRPNVMSQMPPPPSY 157

Query: 270 SGAGPYVAQTY-SQPSYTVSQPVAVAS 347
           S +G Y +QTY S  +YT S P+  AS
Sbjct: 158 SSSGSY-SQTYQSNANYTASSPLPTAS 183


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 26/95 (27%), Positives = 35/95 (36%)
 Frame = +3

Query: 69   PYESHKTYQLQAPQYSQPEVPIHQNMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEE 248
            P  S K   +  P    P +P+     P+P  IP      P S       P   P    E
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVPSTAPPVP--IPTSTPPVPKSSSGAPSAPPPVPAPSSE 1072

Query: 249  AEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDP 353
               +   SGA P  A +   P   V +P +VA+ P
Sbjct: 1073 IPSIPAPSGAPPVPAPSGIPP---VPKP-SVAAPP 1103


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
 Frame = +3

Query: 36  SPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPI---HQNMAPIP------ISIPAGASLT 188
           SP+ R+   YSP     TYQ +   YSQ    +    Q+ + +P      +      S T
Sbjct: 321 SPSSRFPTPYSPSVPFGTYQEKEKSYSQDHAELSYYQQSPSMMPPYDRSSVYFQQPLSRT 380

Query: 189 PVSLQHVQLVPCMC---PVAPEEAEKLQEQSGAGPYVAQTY-SQPSYTVSQPVAVASDPS 356
            V  Q  Q  P       + P       EQ G  P  +Q   + P   V++P +   +P+
Sbjct: 381 DVPNQSFQQYPTTVDGGSMIPNLYPTSAEQMGLYPQDSQNKDTYPKSLVNRPSSAVCEPA 440

Query: 357 KNSN 368
           +N +
Sbjct: 441 RNDS 444


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 234 VAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNS 365
           V+P E+   + +S       QT    S+T S PV++ S  + +S
Sbjct: 246 VSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSS 289


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = -2

Query: 321 QYKTAGSTSELRKDQHRSAPVIFLPLQELL------DTYMVRVERAAKIPG 187
           Q +  G   EL+ DQ++  P++   +QE L       ++M +V+R   +PG
Sbjct: 318 QKRVVGENLELKFDQYKDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPG 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,875
Number of Sequences: 5004
Number of extensions: 62844
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 850352646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)