Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_F06_e46_12.seq
(1519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 32 1.0
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 32 1.0
07_01_0469 - 3552409-3553368 31 2.4
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 30 4.2
01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485 30 4.2
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 30 5.5
03_04_0001 - 16208401-16208778 29 9.7
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 32.3 bits (70), Expect = 1.0
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +3
Query: 72 YESHKTYQLQAPQYSQPEVPIHQNMAPIPISIPAGASLTPVSLQH---VQLVPCMCPVAP 242
++ +T QLQ Q Q V HQ + P+ + AS+ H +QL+ + P P
Sbjct: 555 HQQQQTQQLQPVQQVQQSVQEHQQIKIQPVHVSMDASMNTQVADHQMKLQLLKALQPQQP 614
Query: 243 EEAEKLQEQSGAGPYVAQTYSQPSYTVSQPV 335
+E+ + V + S P V Q V
Sbjct: 615 LISEQQKMLLDLQQQVINSQSAPQQCVQQKV 645
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 32.3 bits (70), Expect = 1.0
Identities = 26/105 (24%), Positives = 38/105 (36%)
Frame = +3
Query: 18 PLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPISIPAGASLTPVS 197
P SP SPT YSP + Y +P Y+ + A P S P + + S
Sbjct: 1720 PTSPGYSPT---SPSYSP--TSPNYSPTSPSYNPSSAKYSPSHAYSPSS-PRLSPYSQTS 1773
Query: 198 LQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQP 332
+ P P +P ++ S PY P Y+ + P
Sbjct: 1774 PNYSPTSPTYSPTSPSYSQPSPSYSPTSPYTTSGGPSPDYSPTSP 1818
>07_01_0469 - 3552409-3553368
Length = 319
Score = 31.1 bits (67), Expect = 2.4
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Frame = +3
Query: 24 SPNVSPTIRYQYMYSPYESHKTYQLQAPQY--SQPEVPIHQNMAPIPISIPAGA-SLTPV 194
+P S T + +P + AP + P VP +AP+P+S PA A S P
Sbjct: 190 TPRKSTTAPVRIQLAPRNPPPSAAPAAPPVPPAAPAVPAAPALAPVPVSAPASALSFAPA 249
Query: 195 SLQHVQLV--PCMCPVAPEEAEKLQEQSGAG--PYVAQTYSQPSYTVSQ 329
S V P P + L S +G P +TY S + S+
Sbjct: 250 SAVRVPSSGNGGWLPATPSGSRDLSSSSSSGSEPGSGETYLPGSRSRSE 298
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 30.3 bits (65), Expect = 4.2
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Frame = +3
Query: 18 PLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPI-SIPAGASLTPV 194
P++ + S +RY+YM + + +L+AP EV ++ I + + P GA T
Sbjct: 39 PVALSSSDKVRYRYMMAIHALQLDVKLEAPN-RLGEVAARMSVPAIAVYTSPPGAVYTSS 97
Query: 195 SLQHVQL-----VPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASD 350
S ++ PC P A + Q+ AG ++ +S P T + A A D
Sbjct: 98 SSSELEASSRGSAPCATAAPPSPASSHRHQAIAGG-LSCLFSSP--TAAPRAAAAQD 151
>01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485
Length = 283
Score = 30.3 bits (65), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 98 ASTAILSARSSDPPKYG-SYTYQYSCRSEPYP 190
AS + DPP Y +YTY+++C + P P
Sbjct: 105 ASKLVQQENDDDPPLYRVTYTYEHTCNTTPVP 136
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.9 bits (64), Expect = 5.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 303 STSELRKDQHRSAPVIFLPLQELLDTYMVRVERAAKIPG 187
ST E RK H+ +P L + TY++ ++R+ +PG
Sbjct: 174 STKESRKGLHKDSPRPLLISKSTDGTYVIGIDRSTGVPG 212
>03_04_0001 - 16208401-16208778
Length = 125
Score = 29.1 bits (62), Expect = 9.7
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 141 NMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYT 320
+++P+P+S+P A +P ++ ++P P A A GP SQ S
Sbjct: 23 SISPLPLSLPLRAQASPEAVAVALVLPRADP-AEVAATAFPTSGSGGPLPPPPSSQASLA 81
Query: 321 VSQPVAVAS 347
V P A AS
Sbjct: 82 V-DPTAAAS 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,127,478
Number of Sequences: 37544
Number of extensions: 384681
Number of successful extensions: 985
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4872885360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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