Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F06_e46_12.seq
         (1519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               37   0.049
SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6)                32   1.0  
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   2.4  
SB_39109| Best HMM Match : PT (HMM E-Value=5)                          30   4.2  
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         30   5.6  
SB_9026| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.4)             30   5.6  
SB_55125| Best HMM Match : zf-C2HC (HMM E-Value=1.5e-13)               29   7.4  
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   9.8  
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)                     29   9.8  

>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 36.7 bits (81), Expect = 0.049
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +3

Query: 18  PLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAP----IPISIPAGASL 185
           P SP+ SPT      YSP  +  +Y   +P YS      H N+ P    +P+SIP     
Sbjct: 563 PTSPSYSPT---SPSYSP--TSPSYSPSSPSYSPSSPSFHHNLRPTPPPLPLSIPLLLQA 617

Query: 186 TPVSLQH-VQLVPCMCPVAP 242
           TP  LQ   Q  P   P  P
Sbjct: 618 TPPHLQSTAQPRPTTVPPLP 637


>SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6)
          Length = 401

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
 Frame = +3

Query: 21  LSPNVSPTIRYQYMYS-PYESHKTYQLQAPQYSQPEVPIHQNMAPIPISIPAGASLTPVS 197
           LSP  +P     YMY  PY S  TY +Q  Q      P H  M P        A  + + 
Sbjct: 60  LSPGGTP-----YMYGGPYTSAPTYPVQVQQQRLDRSPCHVTMGPHAGQYIMQAPFSGIP 114

Query: 198 LQHVQLVPCMCPVAPEEA--EKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNS 365
           +     +PC+  VA      +     +     ++Q   +    VSQ V  A+ PS+ S
Sbjct: 115 VAR-GAIPCIPNVALNGVVNQTTVASAARARAISQDQEEVVPAVSQGVVEATSPSQQS 171


>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 168 PAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQP 332
           P G  +T   LQ  Q V  +  V+PE A+ + +    GP  A     PS+    P
Sbjct: 579 PQGVVMTATVLQQNQGVRSLANVSPELAQAIVQTDITGPITASELENPSHLSDNP 633


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 15   QPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNM 146
            QP SP+  PT        P   H +Y L  P Y+ PE  + Q M
Sbjct: 1542 QPPSPSSIPTNMNFLQQIPLGVHPSYPLPPPPYATPEQYVEQQM 1585


>SB_39109| Best HMM Match : PT (HMM E-Value=5)
          Length = 231

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 288 VAQTYSQPS--YTVSQPVAVASDPSKNSNKQ*IIKCLFSSFRSYF*NP 425
           V Q  S PS  Y+ S  + VAS PS+  +K  +++   +S R YF +P
Sbjct: 6   VLQVASTPSRQYSKSPVLQVASTPSRQYSKSPVLQVASNSSRQYFKSP 53


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +3

Query: 120 PEV-PIHQNMAP-IPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVA 293
           PEV P    + P +P  +PA   + P   + V  VP + P  PE    + E   A P + 
Sbjct: 98  PEVVPAVPEVVPAVPEVVPAVPEIVPAVPEVVPAVPEIVPAVPEIVPAVPEIVPAVPEIV 157

Query: 294 QTYSQPSYTVSQPVAVASDP 353
               +    V + VAV   P
Sbjct: 158 PAVPEVVPAVPEVVAVPEPP 177


>SB_9026| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.4)
          Length = 195

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 16/69 (23%), Positives = 28/69 (40%)
 Frame = +3

Query: 66  SPYESHKTYQLQAPQYSQPEVPIHQNMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPE 245
           S  ++  + + Q    +Q +   HQ     P   PA +  TP   Q  Q  P   P  P+
Sbjct: 124 SESQNEASSKSQQAHNNQSQAAAHQQTQAGPQQTPARSQQTPAGPQQTQAGPQQTPAGPQ 183

Query: 246 EAEKLQEQS 272
           + +   +Q+
Sbjct: 184 QTQAGPQQT 192


>SB_55125| Best HMM Match : zf-C2HC (HMM E-Value=1.5e-13)
          Length = 405

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
 Frame = +3

Query: 6   TWVQPLSPNVSPTIRYQ-YMYSPYESHKTYQLQAPQYSQPEVP-IHQNMAPIPISIPAGA 179
           +WV  L    +P  + + ++ SP  +    ++Q PQ  +P+ P   Q M P P     G 
Sbjct: 247 SWVCFLCKTKTPGRKKKGHVDSPIVTPPRRKIQ-PQSPEPQTPPSSQGMCPTPGCDSTG- 304

Query: 180 SLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQP 332
            +T     H  +  C       +AEKLQE++ +     +T + PS     P
Sbjct: 305 HVTGRFSTHRSIGACPIAAESRKAEKLQEKADSIISTPKTSAVPSPATPNP 355


>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +3

Query: 99  QAPQYSQPEVPIHQNMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAE 254
           Q   YSQP VP+    AP P+  P G    P+     Q +P   P  P E E
Sbjct: 133 QTMMYSQP-VPVMMVPAPTPVFYPGGYGQQPIP---TQPLPPQRPREPTEDE 180


>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
          Length = 482

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
 Frame = +3

Query: 69  PYESHKTYQLQAPQYSQPEVPI--HQNM---APIPISIPAGASLTPVSLQHVQLVPCMCP 233
           P++ H      +P  + P  P+  H N    +P+P++  A A+ T +++ HV   P   P
Sbjct: 175 PHQPHPNNIYSSPASTMPPPPLQTHHNSTYSSPVPLAHSAPATPTQMAVGHVTPPPPTFP 234

Query: 234 VAPEEAEKLQEQSGAGPYVAQTYSQP 311
           V+       Q Q    P  +   + P
Sbjct: 235 VSSRVPTPPQGQGLVPPMSSSAGNTP 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,388,240
Number of Sequences: 59808
Number of extensions: 460115
Number of successful extensions: 1276
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4929866340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)