Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F06_e46_12.seq
         (1519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-10|CAA97336.2|  391|Caenorhabditis elegans Hypothetical p...    40   0.006
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    32   0.93 
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    30   4.9  
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    30   4.9  
AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    29   6.5  
AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and cap...    29   8.6  

>Z73098-10|CAA97336.2|  391|Caenorhabditis elegans Hypothetical
           protein T21C9.9 protein.
          Length = 391

 Score = 39.5 bits (88), Expect = 0.006
 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
 Frame = +3

Query: 6   TWVQPLSPNVSP---TIRY-QYMYSPYES-HKTYQLQAPQYSQPEVPIHQNMAPIPISIP 170
           T+ + L+P   P   T  Y QY   P +S  + YQL  P+Y QP+ P  Q ++  P   P
Sbjct: 58  TFYRDLTPFRQPYYQTASYPQYQQGPAQSLQQMYQLPNPRYIQPQAPRPQYISR-PAPRP 116

Query: 171 AGASLTPVSLQHVQLVPCMCPVA--PEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVA 344
           A A   P  +Q    V    PVA   E  +     +G G  + +T   P  T + PV   
Sbjct: 117 APAPYQPPRVQERPYVQPAAPVAELAETRKNTLHDNGYGEEIERTTYTPVVTAA-PVYET 175

Query: 345 SDPS 356
             P+
Sbjct: 176 DAPT 179


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 32.3 bits (70), Expect = 0.93
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = +3

Query: 12   VQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVP---IHQNMAPIPISIPAGAS 182
            VQP+ P V P    Q +  P E  +    Q+P   QP VP   I    AP P +    AS
Sbjct: 1481 VQPIQP-VQPVQSVQSLPQPAEIPRVVVPQSPGTPQPVVPQVSIVTPQAPQPTAAATSAS 1539

Query: 183  LTPVSLQHVQLVPCMCPVAP 242
              P++ +     P      P
Sbjct: 1540 TGPIAPEPTTAAPTTTETTP 1559


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
 Frame = +3

Query: 66  SPYESHKTYQLQAPQYSQPEVPIHQNMAP-IPISIPAGASLTPVSLQHVQLVPCMCPVAP 242
           +P  +    +  AP  +  E P     A   P S PA A  TP      +  P   P AP
Sbjct: 670 TPAPAPAAEETPAPAQAAEETPAPAPAAEETPASAPA-AEETPAPAPAAEEAPAPAPAAP 728

Query: 243 EEAEKLQEQSGA-GPYVAQTY--SQPSYTV--SQPVAVASDPSKNSN 368
           E      E + A  P V+  Y  +Q + TV  S   A +SD S  +N
Sbjct: 729 ETPAPAAEGAAAPAPIVSSGYDAAQSTDTVVASSAPATSSDASGATN 775


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 20/81 (24%), Positives = 32/81 (39%)
 Frame = +3

Query: 147 APIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVS 326
           AP+    P+ +   P   Q+VQ+    C  AP   +   +Q  A P VAQ   Q      
Sbjct: 54  APVQQQSPSCSCAQPQQTQNVQVQTTQC--APACQQSCTQQCQAAPSVAQCQPQCQQQCQ 111

Query: 327 QPVAVASDPSKNSNKQ*IIKC 389
              A   +P   +    +++C
Sbjct: 112 SQCAPMYNPPATTTPAPVVQC 132


>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = +3

Query: 72  YESHKTYQLQAPQYSQPEVPIHQN--MAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPE 245
           Y +  +Y+   P Y +P   + +   +AP   + P+  + TP  L          P+AP 
Sbjct: 275 YPTTASYET-TPSYPEPSYQVSKKYPIAPTYETTPSYET-TPSYLVQSHAASKKYPIAPT 332

Query: 246 EAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNSNK 371
                 E + +      +YS PSYT  +   VAS PS  + K
Sbjct: 333 -----YETTPSSYDTTPSYSVPSYTAPKKYPVASPPSDYAQK 369


>AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 2 protein.
          Length = 900

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 132 IHQNMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEA-EKLQEQSGAGPYVAQTYSQ 308
           IH+NMA   +++  GASL  V+ Q +  +     +A +E  +++ E  G   +     S 
Sbjct: 307 IHENMAMFKLALECGASLRTVNKQSLSPLTLAAKLAKKEMFDEILELEGDSVWAYGDASS 366

Query: 309 PSYTVSQ 329
            +Y +++
Sbjct: 367 TAYPLAK 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,934,035
Number of Sequences: 27780
Number of extensions: 348432
Number of successful extensions: 925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4359137160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)