Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F06_e46_12.seq
         (1519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   5.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   6.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 33  VSPTIRYQYMYSPYESHKTYQLQAPQYSQPE 125
           +SP     Y YSP  SH  Y +   Q+S P+
Sbjct: 261 LSPVTNNLY-YSPLLSHGLYYVDTEQFSNPQ 290


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 575 ARLKSSLNNLTTXTIKRDXIN 513
           ARL++++ NLT  T+K   ++
Sbjct: 677 ARLRNTMENLTCATVKGSAVD 697


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 164 YSCRSEPYPGIF 199
           Y C  EPYP IF
Sbjct: 215 YPCCDEPYPDIF 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,779
Number of Sequences: 438
Number of extensions: 5152
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53113500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)