Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F06_e46_12.seq
         (1519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family...    33   0.37 
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    33   0.65 
At5g61110.1 68418.m07667 hypothetical protein                          31   2.6  
At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein c...    29   8.0  

>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
           protein similar to proline-rich protein precursor
           GB:AAC34889 [Glycine max]
          Length = 388

 Score = 33.5 bits (73), Expect = 0.37
 Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
 Frame = +3

Query: 12  VQPLSP-NVSPTIRYQYMYSPYESHKTYQLQA-PQYSQPEVPIHQNMAPIPISIPAGASL 185
           +QP +P    PT +   M  P  S      Q+ P++S P+   H N A   +S P  + +
Sbjct: 116 MQPQAPIRKHPTPQPMPMPPPPPSVSANSAQSQPRFSHPQRQGHLNPAVTSMSHPQSSQV 175

Query: 186 T---PVSLQHV--QLVPCMCPVAPEEAEKLQEQ---SGAGPYVAQTYSQP 311
               P +  H   Q  P      P  + +LQ+Q   SG GP+VAQ  S+P
Sbjct: 176 QNAPPPASHHPTSQQPPFHHLDIPASSTQLQQQPMHSGGGPHVAQQQSRP 225


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
            extensin family protein contains similarity to disease
            resistance protein GI:3894383 from [Lycopersicon
            esculentum]; contains leucine-rich repeats, Pfam:PF00560;
            contains proline rich extensin domains,
            INTERPRO:IPR002965
          Length = 847

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
 Frame = +3

Query: 24   SPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPISIPAGASLTPVSLQ 203
            +PN+SP      + +P  S +T Q+  P     + P   + AP PI  P  A  TP S  
Sbjct: 713  APNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSP---SQAPTPILEPVHAP-TPNSKP 768

Query: 204  HVQLVPCMCPV-APEEAEKLQ--EQSGAGPYVAQTYSQPSYTVSQP 332
                 P   PV +PE++E+++  E +   P    + S PS   S P
Sbjct: 769  VQSPTPSSEPVSSPEQSEEVEAPEPTPVNPSSVPS-SSPSTDTSIP 813


>At5g61110.1 68418.m07667 hypothetical protein 
          Length = 113

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 243 EEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNSNKQ 374
           E   +    S +G  ++ T+ QP    + PVAV  D S + N+Q
Sbjct: 61  EVVNQTMTSSDSGNQISATHQQPPQAHASPVAVPMDTSSSDNQQ 104


>At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein
           contais aldehyde dehydrogenase (NADP) family protein
           domain, Pfam:PF00171
          Length = 484

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 47  PLSIYVFAI*IAQNISTASTAILSARSSDPPKYGSYTYQYSCRSEPYPGI 196
           PL+IY F      N     T ILS  SS    +     QY C + P+ G+
Sbjct: 373 PLAIYAFT-----NDENLKTRILSETSSGSVTFNDVMIQYMCDALPFGGV 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,743,843
Number of Sequences: 28952
Number of extensions: 317715
Number of successful extensions: 806
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4057847232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)