Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F05_e38_11.seq
         (1564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    31   0.33 

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
 Frame = +3

Query: 456  AKTWAPKFNYISPVWLQIKRQSPNIYIVSGLHDVDHAWMKSVKQKGSNNNLKIL----PR 623
            A+ W    NY    W     +S  + ++ G+ +VD+ W +   Q+   +N ++L     +
Sbjct: 792  AQGWIDALNY----WAA---RSSKVPLLGGVTNVDYGWARCTGQRAQKSNAQLLKTKTDK 844

Query: 624  ILFENWQPSDLKAFFMEPTSHSEQKAFIEEIKKTCKQ 734
            I+   WQP  +        S  EQ +      K  K+
Sbjct: 845  IIVHKWQPQPVNT-IPSSLSLGEQLSAFNNFMKLLKK 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,629,391
Number of Sequences: 5004
Number of extensions: 85748
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 880085256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)