Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F05_e38_11.seq
         (1564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0728 + 24686642-24687004,24687935-24688008,24689104-246891...    86   8e-17
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052...    33   0.81 
07_03_0543 + 19272389-19272534,19273337-19273496,19273584-192737...    32   1.4  

>01_05_0728 +
           24686642-24687004,24687935-24688008,24689104-24689184,
           24689256-24689337,24689596-24689693,24689722-24689860,
           24691259-24691613,24691923-24692173
          Length = 480

 Score = 85.8 bits (203), Expect = 8e-17
 Identities = 38/91 (41%), Positives = 58/91 (63%)
 Frame = +3

Query: 363 HATYHQDVATRNFNNAVLGYVTPWNNKGYEVAKTWAPKFNYISPVWLQIKRQSPNIYIVS 542
           HAT  ++ + R+F N VL YVTPWN+KGY++AK ++ KF +ISPVW  +K    N  ++ 
Sbjct: 123 HATVSENRSRRHFRNPVLAYVTPWNSKGYDMAKLYSTKFTHISPVWYDLKSDG-NKLVLE 181

Query: 543 GLHDVDHAWMKSVKQKGSNNNLKILPRILFE 635
           G H+ D  W+  ++  GS     +LPR++ E
Sbjct: 182 GQHNFDAKWVSELQSNGS----LVLPRVVLE 208


>04_04_0917 -
           29404341-29404519,29404610-29404744,29404898-29405225,
           29405313-29405532,29405653-29406647,29407233-29407493,
           29407534-29407872,29409309-29409497
          Length = 881

 Score = 32.7 bits (71), Expect = 0.81
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = +3

Query: 156 QYVLVRTMKCIKTILQVIFLLNVCFATLSPPSDKKGQKGVKPQEGPRKNNVLDRKLVDEA 335
           Q V V+T  CIK+  ++  LL+  F   + P D        P + P K N+L+  +VDEA
Sbjct: 575 QLVSVQTSTCIKSKFRLARLLS--FRLYNVPMDVSPSGICGPFKQPEKANLLEMLIVDEA 632

Query: 336 PFAKD 350
              K+
Sbjct: 633 AQLKE 637


>07_03_0543 +
           19272389-19272534,19273337-19273496,19273584-19273741,
           19273852-19273945,19274082-19274198,19275119-19275229,
           19275309-19275396,19275615-19275718,19275796-19275867,
           19275950-19276039,19276151-19276308,19276746-19276752,
           19277140-19277194,19277273-19277421,19277543-19277664,
           19277916-19278105
          Length = 606

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
 Frame = +3

Query: 168 VRTMKCIKTILQVIFLLNVCFATLSPPSDKKGQKG----VKPQEGPRKNNVLDRKLVDEA 335
           VRT  C   +  +IFL    F     P   K QK     + P      NN+L+   VD  
Sbjct: 200 VRTKNCFDIVSYMIFLCGGTFVFPKKPKPSKIQKKEPILLDPWSESTMNNLLENINVDLK 259

Query: 336 PFAKDIMKYHATYHQDVATRNFNNAVLGYVTPWNNKGYEV 455
            FA    K +  YH  V   +  N +   V     + Y++
Sbjct: 260 KFA-GYHKSNKVYHGKVPLTSPQNVLRNKVIELGGRKYQI 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,633,786
Number of Sequences: 37544
Number of extensions: 591727
Number of successful extensions: 937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5046916980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)