Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F05_e38_11.seq
         (1564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4895| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   2e-08
SB_35174| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.5  
SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)                29   7.7  

>SB_4895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 58.0 bits (134), Expect = 2e-08
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
 Frame = +3

Query: 165 LVRTMKCIKTILQVIFLL-NVCF-ATLSPPSDKKGQKGVKPQEGPRKNNVLDRKLVDEAP 338
           + + ++C+  IL +   + NV    TLS  + +K  K +K Q+    +NV+ R LV E P
Sbjct: 1   MAQFLQCVLLILLLFVCMENVQVDGTLSKKAKQKKNKKLKNQQAV--SNVITRGLVTETP 58

Query: 339 FAKDIMKYHATYHQDVATRNFNNAVLGYVTP 431
             +DI+K+H+ Y+++V+ +NF   VL YVTP
Sbjct: 59  RIRDILKHHSKYYKNVSLQNFEGDVLAYVTP 89


>SB_35174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 225 CFATLSPPSDKKGQKGVKPQEGPRKNNVLDRKLVDEAP---FAKDIMKYHATYHQ 380
           C +T+ P  D K      P+  PRK N    KLVD  P   FAK +  +    H+
Sbjct: 117 CDSTIHPACDPKRHSACDPKSEPRKLNACFFKLVDMFPTTSFAKFLKHFLVGSHK 171


>SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)
          Length = 917

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 23/84 (27%), Positives = 26/84 (30%)
 Frame = +2

Query: 914  FNDXYPVXGGXVWDDQ*FXXXPKTQVXMPXFXXXIMXKXXXXXXXXPQPFXILXXXFXGT 1093
            FND   + GG V+DD      PK +            K         Q F  L   F G 
Sbjct: 434  FNDDENISGGGVFDDPIQGNHPKLE--QGALLSEETAKSGLTLNLGQQGFPKLAEKFKGK 491

Query: 1094 PPRHXGGPSWADXXXXKAKXPXAP 1165
            PPR    P        K   P  P
Sbjct: 492  PPRRVAIPLGVKPKEPKGYKPLLP 515


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,531,846
Number of Sequences: 59808
Number of extensions: 635524
Number of successful extensions: 1217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5105932995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)